Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  29   4.5  
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)          28   7.9  

>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 203 TCTPPTYKSTQRCNAACVGRVC 268
           TC PP+   T  CNA CVG  C
Sbjct: 345 TCVPPSV--TPECNATCVGPNC 364


>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
          Length = 1039

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  VQENIMTSNCASSPYSCEATSAC 159
           +QE+I+   CA   ++CE T+ C
Sbjct: 892 LQESIVKGGCAEGQFACEKTNKC 914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,310,952
Number of Sequences: 59808
Number of extensions: 432636
Number of successful extensions: 1055
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)