Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical pr...    28   6.9  
U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protei...    28   6.9  

>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 163 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 65
           L+K   P+TN  M H L +    G+S++ C F+
Sbjct: 21  LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53


>Z50070-4|CAA90394.2|  172|Caenorhabditis elegans Hypothetical
           protein F43G6.3 protein.
          Length = 172

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 152 DVASHEYGDDAQFDVIIFS 96
           D++ +E GDDA FDV+I S
Sbjct: 11  DLSDNELGDDASFDVLISS 29


>U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protein
           169 protein.
          Length = 300

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -2

Query: 389 RTVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFI---VNYCK 264
           R  ++G TV F    TL+ VI   ILY+ + H Q  +   V++C+
Sbjct: 16  RVALVGVTVSFA--ATLVCVIAAPILYNYMQHMQSVMQSEVDFCR 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,107,566
Number of Sequences: 27780
Number of extensions: 327322
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)