Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.28 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    26   0.28 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   2.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.1  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 348 RHIDHSNKKIYSLFYTCTFPNVYRQLLQTRPTHAALHLCVDLYVGGV 208
           R +D   +K   L Y+    +V  +L  +RP  A  + CV L   G+
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELRHSRPVPAKKYDCVTLLFSGI 417


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 348 RHIDHSNKKIYSLFYTCTFPNVYRQLLQTRPTHAALHLCVDLYVGGV 208
           R +D   +K   L Y+    +V  +L  +RP  A  + CV L   G+
Sbjct: 371 RELDGEKQKTDRLLYSVLPISVANELRHSRPVPAKKYDCVTLLFSGI 417


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 330 YYDQCADIAKPDRLPDDDGACCHHFIFDAQR 422
           +Y++ A   +PDR   D G      +FD  R
Sbjct: 246 HYERRATPPQPDRTSKDQGTIGESEVFDTTR 276


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 84  HVTAGSYHVALLVINHLYY 28
           + T GS+++ L V+  +YY
Sbjct: 205 YATLGSFYIPLFVMIQVYY 223


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,679
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)