Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021317
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04570.1 68417.m00670 protein kinase family protein contains ...    29   3.7  
At4g04260.1 68417.m00603 bromo-adjacent homology (BAH) domain-co...    29   3.7  
At2g32760.1 68415.m04008 expressed protein                             29   3.7  
At2g18670.1 68415.m02175 zinc finger (C3HC4-type RING finger) fa...    27   8.5  

>At4g04570.1 68417.m00670 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 654

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = -2

Query: 386 TVVIGKTVGFGNVGTLIIVIKKFILYSILVHFQMFIVNYCKRGR 255
           TV  GK++G+G +  +++V   F   ++LV F  FI  Y +RG+
Sbjct: 277 TVKKGKSIGYGGIIAIVVV---FTFINLLV-FIGFIKVYARRGK 316


>At4g04260.1 68417.m00603 bromo-adjacent homology (BAH)
           domain-containing protein similar to ES43 [Hordeum
           vulgare] GI:1345528; contains Pfam profile PF01426: BAH
           domain
          Length = 193

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -1

Query: 315 SLFYTCTFPNVYRQLLQTRPTHAALHL-CVDLYVGGVHVKENKVINHYLLSFCAS 154
           +++Y C  P    +L++    H  +HL CV     GV ++E K + H++   C+S
Sbjct: 108 AVYYKCEMPYNSDELMELLLCHYRVHLACV-----GVTIEEAKKLEHFVCVECSS 157


>At2g32760.1 68415.m04008 expressed protein
          Length = 352

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -1

Query: 396 DSTHRRHREDGRVWQCRHIDHSNKKIYSLFYTCTFPNVYRQLLQTR 259
           ++  R  REDG++ +    DH   +++SL          +Q+LQ +
Sbjct: 11  ENLRRSDREDGKIIEWEEFDHELTRLWSLSSAMKLATERKQILQPK 56


>At2g18670.1 68415.m02175 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 181

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 198 LSHVHRRHTNRRKGAMRRASAAFAIIDDKHLEMYKYRIENKFFYYYDQC 344
           LS +HR H  RR+   + +S   +    K L  +K+   + +  Y   C
Sbjct: 62  LSSLHRHHRRRRRNRRQESSDGLSSRFVKKLPQFKFSEPSTYTRYESDC 110


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,669,686
Number of Sequences: 28952
Number of extensions: 277978
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)