Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021315
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac...   101   9e-23
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    29   0.78 
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    29   0.78 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   1.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    28   1.4  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    26   4.2  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    26   5.5  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    26   5.5  
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch...    26   5.5  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   5.5  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   7.3  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   7.3  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   9.6  

>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
           Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score =  101 bits (242), Expect = 9e-23
 Identities = 48/104 (46%), Positives = 66/104 (63%)
 Frame = +1

Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
           + KGKRRK+TV IV +D+   D   R+             D+V+I PCP +KY +R+ +L
Sbjct: 78  VVKGKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVL 137

Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARR 561
           P+ D+VEGLTG+LF+VYLKPYF    RPI + D F+  RG  R+
Sbjct: 138 PLADTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFV-VRGSMRQ 180



 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 31/51 (60%), Positives = 41/51 (80%)
 Frame = +2

Query: 101 SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
           S +D +TAILR+K +PN L+V++A +DDNSV+ LS   ME LQLFRGDTV+
Sbjct: 28  SAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVV 78



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 25/55 (45%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 494 FMEAYVRSIVTTPSWV-RGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
           F+EAY R I     +V RG MR VEF+VV+  P  F IV+         EPI RE
Sbjct: 159 FVEAY-RPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINRE 212


>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 448 QLNHQLAVCGLV---FHISLKDTERWI 377
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 448 QLNHQLAVCGLV---FHISLKDTERWI 377
           QLN ++  CG++   F++ LKD E+W+
Sbjct: 64  QLNGRINKCGVISPRFNVKLKDIEKWV 90


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 105 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 218
           L + R    +   DP ++ +  Q  + T+SWH FH  +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 418 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 308
           LV  + LKD   WI    + + E  F   G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 530 PSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKR 652
           P W +G    +E  V+  D  PF + +  P     +E +K+
Sbjct: 446 PQWAQGIAIRIEDSVIVGDDKPFVLTSAAPKEIEEIEALKK 486


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 113 NHQGFIICHFIQNLLLESKNYY 48
           NH  F  C ++QN +++S N Y
Sbjct: 113 NHPAFTSCAYLQNPVVDSNNEY 134


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 505 LRPIHRD-DTFMGPRGHARRRVPSGRN 582
           L  I RD D  +GPR H    VP+G+N
Sbjct: 190 LEEIMRDWDISLGPRPHVLYTVPTGQN 216


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 104 PD-DLSTAILRRKDRPNRLIVEEAVSD 181
           PD D + + + RK+ PNRL++  A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259


>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
           Usp106|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 328 SEFSHQG--NYRLRXRCKRFPCGVCPWQDCVTTEELKL 221
           S F+ +G  ++  R  C+ F CG+CP  D  T  ++ L
Sbjct: 18  SNFTSRGLVHFTDRKVCRSFLCGICP-HDIFTNTKMDL 54


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 478 YLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRGSDT 618
           ++  + HG  +P+H+D  F G     +R +  G  ++I +   G  T
Sbjct: 447 WIDHFVHG--KPVHKDTDFSGWELFGQRAIRKGNYKAIYVPKEGIKT 491


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 141 TDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCQGQTPQ 272
           T P VS+  + +  + QS  F R   S +N  VVT S   +TP+
Sbjct: 74  TPPPVSMGYRYARSSKQS--FQRED-SGYNDDVVTNSSSHRTPR 114


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 78  LNKMADNKALMIYRPRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCQ 257
           LNK   + +    RPR SV+      S S  +   +     +H P+ S  NSSV +   Q
Sbjct: 293 LNKFHLDASPRQARPRRSVSLATGLNSPSVSKPPSSATGPLYHSPQSSLTNSSVASADVQ 352

Query: 258 GQTPQGN 278
            +T   N
Sbjct: 353 ERTHNTN 359


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
            Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 457  TGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGH-ARRRVPSGRNR 585
            T  LFE+YL      G   I   + F+ PR + A R + +  NR
Sbjct: 990  TKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPANRNLATAHNR 1033


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,914
Number of Sequences: 5004
Number of extensions: 56767
Number of successful extensions: 165
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)