Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021315
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0364 - 2834446-2834742,2834838-2835197,2835281-2835562,283... 123 1e-28
10_08_0170 + 15397381-15397418,15397519-15397681,15398419-153986... 118 3e-27
08_02_0657 - 19749835-19751942,19753123-19753561 109 3e-24
01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398 31 0.81
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 30 1.9
01_05_0394 + 21733751-21734584 29 3.3
04_04_0712 + 27476319-27476569,27477150-27477402,27477535-274779... 29 4.3
11_06_0234 + 21574380-21575197,21576131-21576190,21578320-215800... 28 7.5
11_06_0144 - 20608382-20610277 28 7.5
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601... 28 7.5
07_03_0500 - 18798893-18799893,18801616-18801701,18801742-188018... 28 7.5
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 27 9.9
05_05_0060 - 22015440-22015481,22015572-22015709,22016704-220167... 27 9.9
>03_01_0364 -
2834446-2834742,2834838-2835197,2835281-2835562,
2835634-2835705,2835798-2836019,2836105-2836871,
2837206-2837434,2838027-2838189,2838313-2838350
Length = 809
Score = 123 bits (296), Expect = 1e-28
Identities = 54/96 (56%), Positives = 67/96 (69%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+RK+T+CIV +DD C + KIRM DVVS+ CP VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKRVHIL 124
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFM 537
PIDD+VEG+TGNLF+ +LKPYF RP+ + D F+
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFL 160
Score = 69.3 bits (162), Expect = 2e-12
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +2
Query: 110 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
D STAIL RK PNRL+V+EA +DDNSV+ + ME+LQLFRGDTVL
Sbjct: 18 DFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFRGDTVL 65
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +2
Query: 494 FMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
F+EAY VRGGMR+VEF+V+ETDP+ +CIVA EPIKRE
Sbjct: 146 FLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEYCIVAPDTEIFCDGEPIKRE 199
>10_08_0170 +
15397381-15397418,15397519-15397681,15398419-15398647,
15398777-15399543,15399650-15399871,15399961-15400032,
15400100-15400408,15400491-15400850,15401199-15401492
Length = 817
Score = 118 bits (285), Expect = 3e-27
Identities = 52/96 (54%), Positives = 66/96 (68%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+RK+T+CIV +D+ C + KIRM DVVS+ C VKYGKRVHIL
Sbjct: 65 LLKGKKRKDTICIVLADETCEEPKIRMNKVVRKNLRVRLGDVVSVHQCQDVKYGKRVHIL 124
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFM 537
PIDD+VEG+TGNLF+ +LKPYF RP+ + D F+
Sbjct: 125 PIDDTVEGITGNLFDAFLKPYFLEAYRPVRKGDLFL 160
Score = 71.7 bits (168), Expect = 5e-13
Identities = 35/48 (72%), Positives = 39/48 (81%)
Frame = +2
Query: 110 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
D STAIL RK PNRL+V+EA +DDNSVVAL ME+LQLFRGDTVL
Sbjct: 18 DYSTAILERKKSPNRLVVDEATNDDNSVVALHPDTMERLQLFRGDTVL 65
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +2
Query: 494 FMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
F+EAY VRGGMR+VEF+V+ETDP+ +CIVA EPIKRE
Sbjct: 146 FLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPTEYCIVAPDTEIFCDGEPIKRE 199
>08_02_0657 - 19749835-19751942,19753123-19753561
Length = 848
Score = 109 bits (261), Expect = 3e-24
Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 3/131 (2%)
Frame = +1
Query: 256 KGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPI 435
+G+RR+E VC D++CPD ++R+ D+V++ PCP+++ KRV + P
Sbjct: 70 RGRRRREAVCYAQKDESCPDGRLRLSRGVRSNLHVRLGDLVTVKPCPTIRNAKRVQLRPF 129
Query: 436 DDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARR---RVPSGRNRSITILHR 606
DDSVEG++G+LFE YLKPYF LRP+ + D F+ RGH +V + ++
Sbjct: 130 DDSVEGISGDLFEPYLKPYFMDALRPVKKGDRFL-VRGHMHAVEFKVMDTEPNNEPVIVA 188
Query: 607 GSDTVIHCDXG 639
G DT I CD G
Sbjct: 189 G-DTEIFCDEG 198
Score = 50.8 bits (116), Expect = 9e-07
Identities = 30/61 (49%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Frame = +2
Query: 110 DLSTAILR--RKDRPNRLIVEEA---VSDDNSVVALSQAKMEQLQLFRGDTVLPRANAAR 274
D STAIL +K PNRL+ ++A V+ DNS V LS+A ME+L +FRGD V R R
Sbjct: 16 DYSTAILECAKKKSPNRLMADDAEGGVAVDNSTVTLSEATMEELGIFRGDLVTLRGRRRR 75
Query: 275 K 277
+
Sbjct: 76 E 76
>01_01_0146 - 1329804-1330259,1331029-1331060,1331164-1331398
Length = 240
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 575 PLGTRRRACPRGPMKVSSRWIGRKPP*KYGFKYTSNRLPVRPSTESSIG 429
P G R R CP GP+ SRW +PP + V S+E ++G
Sbjct: 109 PDGRRARRCPGGPVHARSRW---RPPVSCKLASAERQGAVAASSEPAMG 154
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 538 GPRGHARRRVPSGRNRSITILHR 606
GPRG R VPSG +R++ LH+
Sbjct: 222 GPRGSGGRSVPSGSSRTVPELHQ 244
>01_05_0394 + 21733751-21734584
Length = 277
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +2
Query: 467 YSKYT*SRTFMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEP 643
Y + + ++A R T + +GG ++ + P PFC+V + P V V P
Sbjct: 31 YHSHAMEMSRLDASGRGSSRTAADDKGGHVVIDIDAADDIPIPFCVVCMEPLEWVAVGP 89
>04_04_0712 +
27476319-27476569,27477150-27477402,27477535-27477914,
27479738-27479864,27479945-27480110,27480221-27480359,
27481854-27481987,27482087-27482229,27482367-27482565,
27482688-27483010
Length = 704
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -1
Query: 548 PRGPMKVSSRWIGR-KPP*KYGFKYTSNRLPVRPSTESSIGSMWTRFPYFTEG 393
PR RW+ + +P K G K+T+ V ++ G+ W R + +G
Sbjct: 64 PRTGKSCRLRWVNKLRPNLKSGCKFTAEEERVVIELQAQFGNKWARIATYLQG 116
>11_06_0234 +
21574380-21575197,21576131-21576190,21578320-21580053,
21581859-21582006
Length = 919
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 545 RGPMKVSSRWIGRKPP*KYGFKYTSNRLPVRPSTESSI 432
+G KV W G +PP ++ Y LP RP+ S+
Sbjct: 743 KGSWKVLEGWEGWEPPRQFRKFYVDGSLPRRPTWVDSV 780
>11_06_0144 - 20608382-20610277
Length = 631
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +3
Query: 384 RSVSFSEIWKTSPHTAN**FS*GSYWQSIRSILEAVLSWRLTSDPS*RHLHGSAGACAPS 563
R++ F +W+ SPH + SY SI+ ++ A ++ TS + + S+G+ S
Sbjct: 10 RALKFDRVWRPSPHRSESDGGSCSYRNSIQRVVTASVAAASTSSTT--LVFPSSGSVTSS 67
Query: 564 SS 569
SS
Sbjct: 68 SS 69
>09_04_0529 +
18356964-18358307,18359829-18359944,18360036-18360133,
18360234-18360418
Length = 580
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +3
Query: 528 HLHGSAGACAPSSSKWSKQIHHHF 599
H HG GA SS + +K HH F
Sbjct: 457 HSHGRGGAALASSQERAKNSHHEF 480
>07_03_0500 -
18798893-18799893,18801616-18801701,18801742-18801805,
18802640-18802853
Length = 454
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 158 IVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARKPFAS 289
++EEA+ DN +A S+ + + G TV+ N R+ FA+
Sbjct: 377 LIEEALGLDNGAMAASRQVLREYGNMSGTTVIFVLNELRRRFAA 420
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 493 FHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRGSDTV--IHCD 633
F GG+ T +GP+G + +GR RS+T+ + G+ + +H D
Sbjct: 23 FVGGMAISDLVKTTLGPKGMDKILQSTGRGRSVTVTNDGATILKSLHID 71
>05_05_0060 -
22015440-22015481,22015572-22015709,22016704-22016799,
22016911-22017135
Length = 166
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 472 EVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRGSDTVIHC 630
E Y++ ++ GL I + G G + P+G + ++T + SD++I C
Sbjct: 87 EEYVETQYYNGLNCIDKQHHTTGT-GFIKVERPNGSSFNVTTVAYSSDSIIRC 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,750,100
Number of Sequences: 37544
Number of extensions: 404118
Number of successful extensions: 1063
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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