Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021315
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         85   6e-17
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)                   30   1.9  
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   5.8  
SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)              28   7.7  

>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 84.6 bits (200), Expect = 6e-17
 Identities = 39/49 (79%), Positives = 46/49 (93%)
 Frame = +2

Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
           D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL
Sbjct: 5   DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVL 53



 Score = 56.4 bits (130), Expect = 2e-08
 Identities = 26/39 (66%), Positives = 30/39 (76%)
 Frame = +2

Query: 539 VRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
           VRGGMRAVEF+V+ETDPSP+CIVA         EP+KRE
Sbjct: 108 VRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKRE 146



 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 22/43 (51%), Positives = 25/43 (58%)
 Frame = +1

Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVV 378
           L KGK+RK+TVCIV SDD   D+KIRM             DVV
Sbjct: 53  LIKGKKRKDTVCIVLSDDTISDDKIRMNRVVRMNLRVRLGDVV 95


>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
          Length = 1115

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 540 SAGACAPSSSKWSKQIHHHFASWL*YRXTL*XWNRLNV 653
           +A +C   S KW+K IH H  S   +      W RLN+
Sbjct: 194 NAYSCDLLSGKWNKDIHSHHLSCQPFIMPSGMWGRLNI 231


>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 3804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 578  RPLGTRRRACPRGPMKVSSRW 516
            RPLG   +  P G ++VSS+W
Sbjct: 3135 RPLGMENKRIPNGAIRVSSQW 3155


>SB_6574| Best HMM Match : eIF-6 (HMM E-Value=1.60028e-42)
          Length = 618

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 17/79 (21%), Positives = 35/79 (44%)
 Frame = -2

Query: 454 DPQLNHQLAVCGLVFHISLKDTERWIPHQKDAHEGCFSQHGSSEFSHQGNYRLRXRCKRF 275
           D +++ Q  V      +S+ + ++ +  + D H+      G S+  ++GN R     K  
Sbjct: 105 DSEIHLQTIVSVTESRVSVSNVQKRLRRRLDEHQKGAHIRGGSQIPYRGNRR-----KEM 159

Query: 274 PCGVCPWQDCVTTEELKLL 218
              +C W+  +  E L L+
Sbjct: 160 SMVLCVWKKTIPFETLTLM 178


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,421,191
Number of Sequences: 59808
Number of extensions: 450702
Number of successful extensions: 1332
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1331
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)