Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021315
(656 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing prot... 138 1e-32
BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing prot... 138 2e-32
AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing prot... 138 2e-32
AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmi... 138 2e-32
AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein. 138 2e-32
AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing prot... 127 3e-29
BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein. 40 0.010
>BC121794-1|AAI21795.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 138 bits (335), Expect = 1e-32
Identities = 67/128 (52%), Positives = 77/128 (60%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+R+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRG 609
PIDD+VEG+TGNLFEVYLKPYF RPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVA 177
Query: 610 SDTVIHCD 633
DTVIHC+
Sbjct: 178 PDTVIHCE 185
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARK 277
DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVL + R+
Sbjct: 10 DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 66
>BC110913-1|AAI10914.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 138 bits (333), Expect = 2e-32
Identities = 67/128 (52%), Positives = 77/128 (60%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+R+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRG 609
PIDD+VEG+TGNLFEVYLKPYF RPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 610 SDTVIHCD 633
DTVIHC+
Sbjct: 178 PDTVIHCE 185
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARK 277
DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVL + R+
Sbjct: 10 DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 66
>AL353795-2|CAH70993.1| 806|Homo sapiens valosin-containing protein
protein.
Length = 806
Score = 138 bits (333), Expect = 2e-32
Identities = 67/128 (52%), Positives = 77/128 (60%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+R+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRG 609
PIDD+VEG+TGNLFEVYLKPYF RPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 610 SDTVIHCD 633
DTVIHC+
Sbjct: 178 PDTVIHCE 185
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARK 277
DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVL + R+
Sbjct: 10 DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 66
>AF100752-1|AAD43016.1| 806|Homo sapiens transitional endoplasmic
reticulum ATPase protein.
Length = 806
Score = 138 bits (333), Expect = 2e-32
Identities = 67/128 (52%), Positives = 77/128 (60%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+R+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRG 609
PIDD+VEG+TGNLFEVYLKPYF RPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 610 SDTVIHCD 633
DTVIHC+
Sbjct: 178 PDTVIHCE 185
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARK 277
DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVL + R+
Sbjct: 10 DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 66
>AC004472-1|AAC07984.1| 806|Homo sapiens TERA_HUMAN protein.
Length = 806
Score = 138 bits (333), Expect = 2e-32
Identities = 67/128 (52%), Positives = 77/128 (60%)
Frame = +1
Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
L KGK+R+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+L
Sbjct: 58 LLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVL 117
Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRG 609
PIDD+VEG+TGNLFEVYLKPYF RPI + D F+ G
Sbjct: 118 PIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177
Query: 610 SDTVIHCD 633
DTVIHC+
Sbjct: 178 PDTVIHCE 185
Score = 85.0 bits (201), Expect = 2e-16
Identities = 39/57 (68%), Positives = 51/57 (89%)
Frame = +2
Query: 107 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLPRANAARK 277
DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVL + R+
Sbjct: 10 DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKKRRE 66
>AF313485-1|AAG29873.1| 307|Homo sapiens valosin-containing protein
protein.
Length = 307
Score = 127 bits (307), Expect = 3e-29
Identities = 62/121 (51%), Positives = 71/121 (58%)
Frame = +1
Query: 271 KETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 450
+E VCIV SDD C DEKIRM DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3 REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62
Query: 451 GLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRVPSGRNRSITILHRGSDTVIHC 630
G+TGNLFEVYLKPYF RPI + D F+ G DTVIHC
Sbjct: 63 GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 122
Query: 631 D 633
+
Sbjct: 123 E 123
>BC007562-1|AAH07562.2| 644|Homo sapiens VCP protein protein.
Length = 644
Score = 39.5 bits (88), Expect = 0.010
Identities = 19/30 (63%), Positives = 21/30 (70%)
Frame = +2
Query: 566 FQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
F+VVETDPSP+CIVA EPIKRE
Sbjct: 1 FKVVETDPSPYCIVAPDTVIHCEGEPIKRE 30
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,116,804
Number of Sequences: 237096
Number of extensions: 2123299
Number of successful extensions: 4172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4166
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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