Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021315
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03340.1 68418.m00286 cell division cycle protein 48, putativ...   121   5e-28
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)...   121   5e-28
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ...   116   2e-26
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak...    31   0.89 
At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containi...    30   1.2  
At3g50120.1 68416.m05479 expressed protein contains Pfam profile...    28   4.8  
At2g30350.2 68415.m03694 endo/excinuclease amino terminal domain...    28   6.3  

>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain; supporting cDNA
           gi|26449351|dbj|AK117125.1|
          Length = 810

 Score =  121 bits (291), Expect = 5e-28
 Identities = 52/96 (54%), Positives = 66/96 (68%)
 Frame = +1

Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
           L KGK+RK+TVCI  +D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFM 537
           P+DD+VEG+TGNLF+ YLKPYF    RP+ + D F+
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFL 157



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 33/48 (68%), Positives = 40/48 (83%)
 Frame = +2

Query: 110 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
           D STAIL RK  PNRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L
Sbjct: 15  DFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTIL 62



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +2

Query: 494 FMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
           F+EAY          VRGGMR+VEF+V+ETDP+ +C+VA         EP+KRE
Sbjct: 143 FLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKRE 196


>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
           (CDC48) identical to SP|P54609 Cell division cycle
           protein 48 homolog {Arabidopsis thaliana}
          Length = 809

 Score =  121 bits (291), Expect = 5e-28
 Identities = 52/96 (54%), Positives = 66/96 (68%)
 Frame = +1

Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
           L KGK+RK+TVCI  +D+ C + KIRM             DV+S+  CP VKYGKRVHIL
Sbjct: 62  LIKGKKRKDTVCIALADETCEEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGKRVHIL 121

Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFM 537
           P+DD+VEG+TGNLF+ YLKPYF    RP+ + D F+
Sbjct: 122 PVDDTVEGVTGNLFDAYLKPYFLEAYRPVRKGDLFL 157



 Score = 74.9 bits (176), Expect = 4e-14
 Identities = 35/51 (68%), Positives = 42/51 (82%)
 Frame = +2

Query: 101 SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
           S  D STAIL RK  PNRL+V+EA++DDNSVV+L  A ME+LQLFRGDT+L
Sbjct: 12  SKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTIL 62



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +2

Query: 494 FMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
           F+EAY          VRGGMR+VEF+V+ETDP+ +C+VA         EP+KRE
Sbjct: 143 FLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPAEYCVVAPDTEIFCEGEPVKRE 196


>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
           CDC48, putative very strong similarity to SP|P54609 Cell
           division cycle protein 48 homolog {Arabidopsis
           thaliana}; contains Pfam profiles PF00004: ATPase AAA
           family, PF02359: Cell division protein 48 (CDC48)
           N-terminal domain
          Length = 815

 Score =  116 bits (278), Expect = 2e-26
 Identities = 48/96 (50%), Positives = 65/96 (67%)
 Frame = +1

Query: 250 LAKGKRRKETVCIVXSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHIL 429
           L KGK+RK+TVCI  +D+ C + KIRM             DV+S+  CP VKYG RVHIL
Sbjct: 63  LIKGKKRKDTVCIALADETCDEPKIRMNKVVRSNLRVRLGDVISVHQCPDVKYGNRVHIL 122

Query: 430 PIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFM 537
           P+DD++EG++GN+F+ YLKPYF    RP+ + D F+
Sbjct: 123 PLDDTIEGVSGNIFDAYLKPYFLEAYRPVRKGDLFL 158



 Score = 67.3 bits (157), Expect = 8e-12
 Identities = 31/48 (64%), Positives = 39/48 (81%)
 Frame = +2

Query: 110 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVL 253
           D STAIL +K   NRL+V+EA++DDNSVV+L    ME+LQLFRGDT+L
Sbjct: 16  DFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTIL 63



 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 26/54 (48%), Positives = 34/54 (62%)
 Frame = +2

Query: 494 FMEAYVRSIVTTPSWVRGGMRAVEFQVVETDPSPFCIVALIPXYTVTVEPIKRE 655
           F+EAY          VRGGMR++EF+V+ETDP+ +C+VA         EPIKRE
Sbjct: 144 FLEAYRPVRKGDLFLVRGGMRSIEFKVIETDPAEYCVVAPDTEIFCEGEPIKRE 197


>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
           similarity to Pfam domain PF01612: 3'-5' exonuclease
          Length = 263

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -2

Query: 241 TTEELKLLHFGL*KCHD*VVIAD 173
           TTEELK+ H+ L KC D +V+A+
Sbjct: 3   TTEELKISHYKLYKCFDFLVVAN 25


>At3g26630.1 68416.m03328 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 455

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 396 RTRSDGYHIRKTHTKVVSHNTVHPNFLIRAII 301
           RT S+   +++ HTK++ HN  +   L+R +I
Sbjct: 28  RTCSNFSQLKQIHTKIIKHNLTNDQLLVRQLI 59


>At3g50120.1 68416.m05479 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function; expression
           supported by MPSS
          Length = 531

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 599 KMVMDLFRPLGTRRRACPRGPMKVSS 522
           KM +D  R L  + RAC  GP+ +SS
Sbjct: 160 KMYIDAMRELEEKARACYEGPLSLSS 185


>At2g30350.2 68415.m03694 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 368

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 403 KYGKRVHILPIDDSVEGLTGNLFEVYLKPYFHGGLRPIHRDDTFMGPRGHARRRV 567
           K G R  + P+ +  +G+TG   + +   Y    L P H+  T++G   + RRR+
Sbjct: 4   KRGNRKALDPVGE--DGVTGKDGKGFFACYLLTSLSPRHKGQTYIGFTVNPRRRI 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,869,944
Number of Sequences: 28952
Number of extensions: 313455
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)