Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021311
         (667 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    24   0.97 
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    22   3.9  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.9  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.9  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 378 FKILQGNKYLIKYYFIFGI-DIKY 310
           F +L G+ Y++ Y F F + D++Y
Sbjct: 263 FILLVGDSYIVMYVFFFHLSDVRY 286


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 375 KILQGNKYLIKYYFIFGIDIKY 310
           KI +  +Y   YY  FG+ + Y
Sbjct: 106 KIKKTKRYCYYYYAFFGVHLAY 127


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 251 TMKEIYSLIHIYKKLQINIKYLISIPKMK*YLIKYLLPCKIL 376
           T KE+  +I    K +I I+    I +     +K+L  C++L
Sbjct: 645 TEKELLGVIFALHKFRIYIQVTKIIIRTDHQALKFLSRCRLL 686


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 176 TF*LYFCCAVLFLSVII*KYVCFN 105
           T  L FCCA +F ++ +   +C +
Sbjct: 177 TMHLLFCCAFIFFNMHLLFLLCLD 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,367
Number of Sequences: 336
Number of extensions: 3108
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)