Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021311
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   9.8  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   9.8  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    25   9.8  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.8  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 521  VKDLPNVFVKIFFFLKSNQISNTV 592
            +K++PN  V  F  LKS QI  TV
Sbjct: 1207 LKEMPNDIVSQFEMLKSKQIELTV 1230


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 474  SVLFFVSAIEFDCNYSFIRNSFFLYVQ 394
            S+L+FV A+ F C+  FI   F+   Q
Sbjct: 1013 SLLYFVRALLFYCSSIFISKEFYTVEQ 1039


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 122 KYVCFNCIKKKYQ-ETQDSFPFTMG 51
           K +C+NCIK K Q E    FP   G
Sbjct: 60  KPICYNCIKSKRQCEGYTHFPRPSG 84


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 441 DCNYSFIRNSFFLYVQTGFHN 379
           DC    +RN + LY+ T  H+
Sbjct: 854 DCQIMDVRNDYHLYIMTWLHH 874


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,152
Number of Sequences: 5004
Number of extensions: 49446
Number of successful extensions: 94
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)