Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021311
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0021 + 133473-133589,133936-134107,134662-134873                 29   3.3  
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516...    29   4.4  

>02_01_0021 + 133473-133589,133936-134107,134662-134873
          Length = 166

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 131 LHLKIKQHNKNKVRMFYMNGVFKVSGFISHSCNP 232
           LH+  K+ NK  VR    NG F       H  NP
Sbjct: 100 LHIAAKERNKRAVRFLIENGAFLPPDMNDHRFNP 133


>03_02_0034 -
           5166987-5167010,5167596-5167659,5168071-5168174,
           5168685-5168829,5168914-5169055,5169432-5169751,
           5169895-5170196,5170603-5170647,5171218-5171268,
           5171374-5171460,5171587-5171764,5172453-5172528,
           5173018-5173234,5173604-5173909
          Length = 686

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +3

Query: 378 NYGNRSEHTKKKNYV*MNSCNQILLRRQKIKPMLIQFKPVNKI 506
           NY + SE T KK  +   S   +LL  QKI+ ++   K ++K+
Sbjct: 582 NYASVSEFTDKKINLLSKSNGNMLLSEQKIRAVVTNAKQMHKV 624


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,957,329
Number of Sequences: 37544
Number of extensions: 230067
Number of successful extensions: 268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)