Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021311
         (667 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.84 
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  

>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = -3

Query: 572 WILEKKRSSQKH*VNLLPKQNLNFVYGLKLYKH 474
           W+ EK+  + +H  +L PK+N ++V G+KL +H
Sbjct: 411 WLYEKQSCTDRHVKHLCPKKNCDWV-GVKLERH 442


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/35 (51%), Positives = 21/35 (60%)
 Frame = +2

Query: 401 YKKKELRINE*LQSNSIAETKNKTDAYTV*ARKQN 505
           YKKK   +NE LQ+   AETKNK     + A KQN
Sbjct: 638 YKKKNNELNEALQA---AETKNKAMEKEIDALKQN 669


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,319,722
Number of Sequences: 59808
Number of extensions: 298862
Number of successful extensions: 447
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)