Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021311
         (667 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          26   0.37 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      26   0.37 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   1.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.6  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   4.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.0  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 548 KIFFFLKSNQISNTVHXRVKLVGK 619
           K+FFFL S   SNT    + L GK
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLYGK 642


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 548 KIFFFLKSNQISNTVHXRVKLVGK 619
           K+FFFL S   SNT    + L GK
Sbjct: 619 KMFFFLSSMDESNTKSYEIPLYGK 642


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/44 (20%), Positives = 24/44 (54%)
 Frame = -2

Query: 471 VLFFVSAIEFDCNYSFIRNSFFLYVQTGFHNFKILQGNKYLIKY 340
           +++F+  I  +  Y F+R +F  ++ +  ++    +G +YL  +
Sbjct: 220 LIYFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -2

Query: 465 FFVSAIEFDCNYSFIRNSFFLYVQTGFHNFKILQGNKYLIKY 340
           +F+  I  +  Y F+R +F  ++ +  ++    +G +YL  +
Sbjct: 222 YFIEDIGLNTYYFFLRQAFPFWLPSKEYDLPDYRGEEYLYSH 263


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +3

Query: 351 NTYYLVKF*NYGNRSEHTKKKNYV*MNSCNQI 446
           N Y    + NY N   +  KK Y  +N   QI
Sbjct: 87  NNYNYSNYNNYNNNYNNYNKKLYYNINYIEQI 118


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +2

Query: 200 VSGFISHSCNP 232
           +S FI+HSC+P
Sbjct: 574 ISHFINHSCDP 584


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 94  FFIQLKHTYF*MITLKNKTAQQK*SQNVLY 183
           +F   KH+Y   IT+ NK  +     ++LY
Sbjct: 123 YFYNGKHSYVHTITVPNKLLRISQDGDILY 152


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 455 ETKNKTDAYTV 487
           ET  +TDAYTV
Sbjct: 298 ETSTRTDAYTV 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 7/14 (50%), Positives = 13/14 (92%)
 Frame = +2

Query: 248 NTMKEIYSLIHIYK 289
           NT++E+Y+L ++YK
Sbjct: 583 NTIQELYTLNNMYK 596


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,639
Number of Sequences: 438
Number of extensions: 3524
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)