Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021308
(552 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock prote... 84 9e-19
AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein p... 21 5.4
AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein p... 21 5.4
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 21 5.4
AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein. 21 7.2
AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase ... 21 7.2
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 21 7.2
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 21 7.2
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 21 9.5
>EF633444-1|ABR32189.1| 721|Tribolium castaneum heat shock protein
90 protein.
Length = 721
Score = 83.8 bits (198), Expect = 9e-19
Identities = 67/161 (41%), Positives = 83/161 (51%), Gaps = 7/161 (4%)
Frame = +2
Query: 65 ENRRNGDTASGGETFAFQAEIAQLCP*SSTPFTPTRNFPS*ADFQFIGRFRQNQV*ISHG 244
E +NGD ETFAFQAEIAQL F + + I I +
Sbjct: 3 EENQNGDV----ETFAFQAEIAQLMSLIINTFYSNKEIFL---RELISNSSDALDKIRYE 55
Query: 245 SV----KIDSGKELYIKIIPNKTRALLRS-SIRFGMTKADLV-NIWEPSRNLVLKLSWRL 406
S+ ++DSGKELYIKIIPNK L GMTKADLV N+ +++ L
Sbjct: 56 SLTNPSRLDSGKELYIKIIPNKNDGTLTIIDTGIGMTKADLVHNLGTIAKSGTKAFMEAL 115
Query: 407 SSRCRHQHDXQFGVGFYSSYLVADRVT-VTLNT*REQYVWD 526
+ QFGVGFYS+YLVAD+VT V+ N EQYVW+
Sbjct: 116 QAGADISMIGQFGVGFYSAYLVADKVTVVSKNNDDEQYVWE 156
Score = 59.7 bits (138), Expect = 2e-11
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSRSFPTRRGHS---YDHRSGLV* 338
+EIFLRELISNSSDALDKIRYESLT+PS+ K + P + + D G+
Sbjct: 34 KEIFLRELISNSSDALDKIRYESLTNPSRLDSGKELYIKIIPNKNDGTLTIIDTGIGMT- 92
Query: 339 PRPIW*TFGNHREIWY*SFHGGSQAGADISMI 434
+ G + +F QAGADISMI
Sbjct: 93 KADLVHNLGTIAKSGTKAFMEALQAGADISMI 124
Score = 50.0 bits (114), Expect = 1e-08
Identities = 41/101 (40%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIRQNR*WQRAVHQDHSQ------- 294
MSLIINTFYSNK+ R L + S L +IR + +
Sbjct: 23 MSLIINTFYSNKEIFL-------RELISNSSDALDKIRYESLTNPSRLDSGKELYIKIIP 75
Query: 295 -QDEGTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEALK 411
+++GTLTIID + + +LGTIAKSGTKAFMEAL+
Sbjct: 76 NKNDGTLTIIDTGIGMTKADLVHNLGTIAKSGTKAFMEALQ 116
>AJ005422-1|CAA06528.1| 287|Tribolium castaneum caudal protein
protein.
Length = 287
Score = 21.4 bits (43), Expect = 5.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 381 WY*SFHGGSQAGADISM 431
WY +H G+Q G + M
Sbjct: 28 WYAGYHQGAQMGPEQQM 44
>AJ005421-1|CAA06527.1| 249|Tribolium castaneum caudal protein
protein.
Length = 249
Score = 21.4 bits (43), Expect = 5.4
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 381 WY*SFHGGSQAGADISM 431
WY +H G+Q G + M
Sbjct: 28 WYAGYHQGAQMGPEQQM 44
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 21.4 bits (43), Expect = 5.4
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = -2
Query: 518 RIALVMCLE*QSRGQRPSNWSRSQHRTXNHADVGTCLRASMKALVP 381
R+A V + G+R +RS+ H GTC + VP
Sbjct: 315 RVAAVQVPQLAGGGRRGPGPARSRRHLPAHLVAGTCFVQLIGMRVP 360
>AY531877-1|AAT08872.1| 247|Tribolium castaneum ORF1p protein.
Length = 247
Score = 21.0 bits (42), Expect = 7.2
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 265 QRAVHQDHSQQDE 303
+RA+ Q HS++DE
Sbjct: 63 KRAITQQHSERDE 75
>AY362543-1|AAQ63455.1| 677|Tribolium castaneum chitin synthase
protein.
Length = 677
Score = 21.0 bits (42), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 411 LESLHESFSTRFRDGSQMFTKSALVIPNRIDDRKS 307
++ L ++FS F+D + T+ A V+P + S
Sbjct: 82 VDFLFDNFSAAFQDHNIEITEVAPVLPGNYANASS 116
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 21.0 bits (42), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 411 LESLHESFSTRFRDGSQMFTKSALVIPNRIDDRKS 307
++ L ++FS F+D + T+ A V+P + S
Sbjct: 315 VDFLFDNFSAAFQDHNIEITEVAPVLPGNYANASS 349
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
CHS2 protein.
Length = 1464
Score = 21.0 bits (42), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = -1
Query: 411 LESLHESFSTRFRDGSQMFTKSALVIPNRIDDRKS 307
++ L ++FS F+D + T+ A V+P + S
Sbjct: 315 VDFLFDNFSAAFQDHNIEITEVAPVLPGNYANASS 349
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 20.6 bits (41), Expect = 9.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 416 TCLRASMKALVPDFAMVPKCSPNRPWSYQTGSMIVR 309
TC R KA + K S RP S T + +VR
Sbjct: 884 TCWRECDKATCEKLFRMKKSSALRPASGGTTARVVR 919
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,670
Number of Sequences: 336
Number of extensions: 2713
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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