Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021308
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 60 3e-10
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 27 1.4
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 1.8
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 26 3.2
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 26 3.2
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 26 4.2
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 4.2
SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.4
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces... 25 9.8
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 59.7 bits (138), Expect = 3e-10
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 10/155 (6%)
Frame = +2
Query: 92 SGGETFAFQAEIAQLCP*S-STPFTPT----RNFPS*ADFQFIGRFRQNQV*ISHGSVKI 256
S ETF F+AEI+QL +T ++ R S A + + R + H +
Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNAS-DALDKIRYQSLSDPHA---L 57
Query: 257 DSGKELYIKIIPNKTRALLRSSIR---FGMTKADLVN-IWEPSRNLVLKLSWRLSSRCRH 424
D+ K+L+I+I P+K +L SIR GMTK DL+N + +++ + +S
Sbjct: 58 DAEKDLFIRITPDKENKIL--SIRDTGIGMTKNDLINNLGVIAKSGTKQFMEAAASGADI 115
Query: 425 QHDXQFGVGFYSSYLVADRV-TVTLNT*REQYVWD 526
QFGVGFYS+YLVAD+V V+ + EQY+W+
Sbjct: 116 SMIGQFGVGFYSAYLVADKVQVVSKHNDDEQYIWE 150
Score = 52.4 bits (120), Expect = 4e-08
Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSRSFPTRRGHSYDHR-SGL-V*P 341
+EIFLRELISN+SDALDKIRY+SL+DP K R P + R +G+ +
Sbjct: 28 KEIFLRELISNASDALDKIRYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTK 87
Query: 342 RPIW*TFGNHREIWY*SFHGGSQAGADISMI 434
+ G + F + +GADISMI
Sbjct: 88 NDLINNLGVIAKSGTKQFMEAAASGADISMI 118
Score = 31.1 bits (67), Expect = 0.11
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIR-QNR*WQRAVHQDHS------- 291
MSLIINT YSNK+ R L + + L +IR Q+ A+ +
Sbjct: 17 MSLIINTVYSNKEIFL-------RELISNASDALDKIRYQSLSDPHALDAEKDLFIRITP 69
Query: 292 QQDEGTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEA 405
++ L+I D + + +LG IAKSGTK FMEA
Sbjct: 70 DKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFMEA 108
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 27.5 bits (58), Expect = 1.4
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Frame = +3
Query: 12 TCIKTLSHFV*IKQKAVKKTGEMETQPAEVKP---SRSRLR----SLSYVPDHQH-LLLQ 167
T +K L V + A K + E +PA + P S S L + S +PDH + ++Q
Sbjct: 93 TNVKLLDRLVRVDHVASYKVPQKEKEPANLVPLGESGSSLSVSTINTSNLPDHDYKTIIQ 152
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSRSFPTRRGHSYDHR 323
E+ + D LD +R + + + +S HS HR
Sbjct: 153 NEVEQTLSPKDEKDLLDPMRDYIHREKRRKLKHESSDRSDKSDSNRHSRHHR 204
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 48 KQKAVKKTGEMETQPAEVKPSRSRLRSLSYVPDHQHLLLQQE 173
K+KA P + +R RLR L H HLL+++E
Sbjct: 43 KKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEE 84
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 417 HLLESLHESFSTRFRDGSQMFTKSALVIPNRIDDRK 310
H + +H +F+ F FTK ++ NRI K
Sbjct: 795 HTYDEIHRTFTQSFTQKQLEFTKQKSLLENRISFEK 830
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 26.2 bits (55), Expect = 3.2
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +3
Query: 177 FLRELISNSSDALDKIRYESLTDPSKSI---VAKSCTSRSFPTRRGHSYDHRS 326
+L+ L + D + E++T P +S+ V KSC P R H YD ++
Sbjct: 590 WLKSLFLSLLDLVIPNPKENITLPVQSLAFPVTKSCRPPPIPPRESHVYDFQN 642
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.8 bits (54), Expect = 4.2
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = +3
Query: 177 FLRELISNSSDALDKIRYESL 239
F+R+++ +D L+K+R++SL
Sbjct: 224 FIRKVVLTKADGLEKLRFQSL 244
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.8 bits (54), Expect = 4.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 99 VKPSRSRLRSLSYVPDHQH 155
+ SR+R R L Y P+H H
Sbjct: 799 ISDSRTRNRMLKYTPEHMH 817
>SPAC1F8.04c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 9/40 (22%)
Frame = +1
Query: 316 IIDPVWYDQGRFGEHLGTIA---------KSGTKAFMEAL 408
+ D VW QG F + G +A KSGT F+EAL
Sbjct: 87 LCDTVWKMQGNFTQEDGYVASQLTIAEMLKSGTTTFVEAL 126
>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 24.6 bits (51), Expect = 9.8
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -2
Query: 116 GTRRFHLRWLCLHFSGFLYCFLFNSHKMTEGFYTR 12
G + +L ++ FS L+C FN + FY R
Sbjct: 316 GYEKKNLYYISSAFSNLLHCRYFNCNDRLRSFYYR 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,953
Number of Sequences: 5004
Number of extensions: 47050
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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