Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021308
(552 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 67 8e-12
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 67 1e-11
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 67 1e-11
04_01_0042 + 473912-474058,474208-474349,474442-476264 64 7e-11
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 51 5e-07
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 46 2e-05
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 46 3e-05
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 45 5e-05
11_08_0084 + 28260647-28262575 37 0.012
02_05_0337 - 28060009-28060716,28061055-28061498,28061732-280617... 32 0.35
12_02_1070 - 25814741-25815850 29 1.9
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 29 2.5
01_06_0556 + 30207124-30207581,30207692-30207901,30208016-302081... 29 3.3
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 28 5.7
05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183 27 7.5
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 27 10.0
09_02_0355 - 7727082-7727323,7728036-7728126 27 10.0
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251 27 10.0
03_03_0251 - 15849211-15851457 27 10.0
03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946 27 10.0
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 67.3 bits (157), Expect = 8e-12
Identities = 57/152 (37%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = +2
Query: 89 ASGGETFAFQAEIAQLCP*SSTPFTPTRN-FPS*ADFQFIGRFRQNQV*ISHGSVKIDSG 265
AS ETFAFQAEI QL F + F + + K+D+
Sbjct: 2 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61
Query: 266 KELYIKIIPNK---TRALLRSSIRFGMTKADLVN-IWEPSRNLVLKLSWRLSSRCRHQHD 433
EL+I I+P+K T +++ S I GMTK+DLVN + +R+ + L++
Sbjct: 62 PELFIHIVPDKASNTLSIIDSGI--GMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
Query: 434 XQFGVGFYSSYLVADRVTVTL-NT*REQYVWD 526
QFGVGFYS+YLVA+RV VT + EQYVW+
Sbjct: 120 GQFGVGFYSAYLVAERVVVTTKHNDDEQYVWE 151
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSK 254
+EIFLRELISNSSDALDKIR+ESLTD SK
Sbjct: 29 KEIFLRELISNSSDALDKIRFESLTDKSK 57
Score = 40.3 bits (90), Expect = 0.001
Identities = 38/100 (38%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIRQNR*WQRAVHQD------HSQQ 297
+SLIINTFYSNK+ R L + S L +IR ++ H
Sbjct: 18 LSLIINTFYSNKEIFL-------RELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVP 70
Query: 298 DE--GTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEAL 408
D+ TL+IID + + +LGTIA+SGTK FMEAL
Sbjct: 71 DKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEAL 110
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 66.9 bits (156), Expect = 1e-11
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = +2
Query: 89 ASGGETFAFQAEIAQLCP*SSTPFTPTRN-FPS*ADFQFIGRFRQNQV*ISHGSVKIDSG 265
AS ETFAFQAEI QL F + F + + K+D+
Sbjct: 2 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61
Query: 266 KELYIKIIPNK---TRALLRSSIRFGMTKADLVN-IWEPSRNLVLKLSWRLSSRCRHQHD 433
EL+I I+P+K T +++ S + GMTK+DLVN + +R+ + L++
Sbjct: 62 PELFIHIVPDKASNTLSIIDSGV--GMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
Query: 434 XQFGVGFYSSYLVADRVTVTL-NT*REQYVWD 526
QFGVGFYS+YLVA+RV VT + EQYVW+
Sbjct: 120 GQFGVGFYSAYLVAERVVVTTKHNDDEQYVWE 151
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSK 254
+EIFLRELISNSSDALDKIR+ESLTD SK
Sbjct: 29 KEIFLRELISNSSDALDKIRFESLTDKSK 57
Score = 40.7 bits (91), Expect = 8e-04
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIRQNR*WQRAVHQD------HSQQ 297
+SLIINTFYSNK+ R L + S L +IR ++ H
Sbjct: 18 LSLIINTFYSNKEIFL-------RELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVP 70
Query: 298 DE--GTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEAL 408
D+ TL+IID V + +LGTIA+SGTK FMEAL
Sbjct: 71 DKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEAL 110
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 66.9 bits (156), Expect = 1e-11
Identities = 56/152 (36%), Positives = 79/152 (51%), Gaps = 6/152 (3%)
Frame = +2
Query: 89 ASGGETFAFQAEIAQLCP*SSTPFTPTRN-FPS*ADFQFIGRFRQNQV*ISHGSVKIDSG 265
AS ETFAFQAEI QL F + F + + K+D+
Sbjct: 2 ASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQ 61
Query: 266 KELYIKIIPNK---TRALLRSSIRFGMTKADLVN-IWEPSRNLVLKLSWRLSSRCRHQHD 433
EL+I I+P+K T +++ S + GMTK+DLVN + +R+ + L++
Sbjct: 62 PELFIHIVPDKASNTLSIIDSGV--GMTKSDLVNNLGTIARSGTKEFMEALAAGADVSMI 119
Query: 434 XQFGVGFYSSYLVADRVTVTL-NT*REQYVWD 526
QFGVGFYS+YLVA+RV VT + EQYVW+
Sbjct: 120 GQFGVGFYSAYLVAERVVVTTKHNDDEQYVWE 151
Score = 54.4 bits (125), Expect = 6e-08
Identities = 26/29 (89%), Positives = 28/29 (96%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSK 254
+EIFLRELISNSSDALDKIR+ESLTD SK
Sbjct: 29 KEIFLRELISNSSDALDKIRFESLTDKSK 57
Score = 40.7 bits (91), Expect = 8e-04
Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIRQNR*WQRAVHQD------HSQQ 297
+SLIINTFYSNK+ R L + S L +IR ++ H
Sbjct: 18 LSLIINTFYSNKEIFL-------RELISNSSDALDKIRFESLTDKSKLDAQPELFIHIVP 70
Query: 298 DE--GTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEAL 408
D+ TL+IID V + +LGTIA+SGTK FMEAL
Sbjct: 71 DKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEAL 110
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 64.1 bits (149), Expect = 7e-11
Identities = 52/148 (35%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Frame = +2
Query: 101 ETFAFQAEIAQLCP*SSTPFTPTRN-FPS*ADFQFIGRFRQNQV*ISHGSVKIDSGKELY 277
ETFAFQAEI QL F + F + + K+D+ EL+
Sbjct: 13 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF 72
Query: 278 IKIIP---NKTRALLRSSIRFGMTKADLVN-IWEPSRNLVLKLSWRLSSRCRHQHDXQFG 445
I+++P +KT +++ S + GMTK+DLVN + +R+ + L + QFG
Sbjct: 73 IRLVPYKPSKTLSIIDSGV--GMTKSDLVNNLGTIARSGTKEFMEALQAGADVSMIGQFG 130
Query: 446 VGFYSSYLVADRVTVTL-NT*REQYVWD 526
VGFYS+YLVA++V VT + EQYVW+
Sbjct: 131 VGFYSAYLVAEKVVVTTKHNDDEQYVWE 158
Score = 55.2 bits (127), Expect = 3e-08
Identities = 40/92 (43%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Frame = +3
Query: 168 QEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSRSFPTRRGHS---YDHRSGLV* 338
+EIFLRELISNSSDALDKIR+ESLTD SK R P + + D G+
Sbjct: 36 KEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIRLVPYKPSKTLSIIDSGVGMT- 94
Query: 339 PRPIW*TFGNHREIWY*SFHGGSQAGADISMI 434
+ G F QAGAD+SMI
Sbjct: 95 KSDLVNNLGTIARSGTKEFMEALQAGADVSMI 126
Score = 40.3 bits (90), Expect = 0.001
Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Frame = +1
Query: 136 MSLIINTFYSNKKFSFVS*FPIHRTL*TKSGMNLSRIRQNR*WQRAVHQDHSQ------- 294
+SLIINTFYSNK+ R L + S L +IR ++ +
Sbjct: 25 LSLIINTFYSNKEIFL-------RELISNSSDALDKIRFESLTDKSKLDAQPELFIRLVP 77
Query: 295 -QDEGTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEALK 411
+ TL+IID V + +LGTIA+SGTK FMEAL+
Sbjct: 78 YKPSKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALQ 118
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 51.2 bits (117), Expect = 5e-07
Identities = 26/56 (46%), Positives = 37/56 (66%)
Frame = +3
Query: 81 ETQPAEVKPSRSRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIRYESLTDP 248
+T P E ++ + L + H L +E+FLREL+SN+SDALDK+RY S+TDP
Sbjct: 348 DTPPVEKHEYQAEVNRLMDLIVHS-LYSNKEVFLRELVSNASDALDKLRYLSVTDP 402
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/32 (53%), Positives = 26/32 (81%), Gaps = 2/32 (6%)
Frame = +2
Query: 437 QFGVGFYSSYLVADRVTVTLNT*R--EQYVWD 526
QFGVGFYS++LV+D+V V+ + + +QYVW+
Sbjct: 472 QFGVGFYSAFLVSDKVAVSTKSPKSDKQYVWE 503
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 289 SQQDEGTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEALKQ 414
+ ++ G +TI D + + + LGTIA SGT F++ALK+
Sbjct: 417 TDKENGIITITDTGIGMTRQELVDSLGTIASSGTAKFLKALKE 459
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 46.0 bits (104), Expect = 2e-05
Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 KKTGEMET--QPAEVKPSRSRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIRYES 236
K GE E + E + SRL L + H +E+FLREL+SN+SDALDK+R+ S
Sbjct: 73 KPAGEEEAAGEQFEYQAEVSRLLDLIVHSLYSH----KEVFLRELVSNASDALDKLRFLS 128
Query: 237 LTDPS 251
+TD S
Sbjct: 129 VTDSS 133
Score = 39.9 bits (89), Expect = 0.001
Identities = 17/34 (50%), Positives = 27/34 (79%), Gaps = 2/34 (5%)
Frame = +2
Query: 437 QFGVGFYSSYLVADRVTVTLNT*R--EQYVWDLL 532
QFGVGFYS++LVA++V V+ + + +QYVW+ +
Sbjct: 211 QFGVGFYSAFLVAEKVVVSTKSPKADKQYVWEAM 244
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 361 LGTIAKSGTKAFMEALKQ 414
LGTIA+SGT F++ALK+
Sbjct: 181 LGTIAQSGTSKFLKALKE 198
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/43 (53%), Positives = 33/43 (76%)
Frame = +3
Query: 156 LLLQQEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSR 284
L ++IFLRELISN+SDALDKIR+ +LTD K ++ + T++
Sbjct: 124 LYSNKDIFLRELISNASDALDKIRFLALTD--KEVLGEGDTAK 164
Score = 39.9 bits (89), Expect = 0.001
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Frame = +2
Query: 269 ELYIKIIPNKTRALLRSSIR-FGMTKADLV-NIWEPSRNLVLKLSWRLSSRCRHQHDXQF 442
+L I+I +K + +L R GMTK DL+ N+ +++ ++ + QF
Sbjct: 164 KLEIQIKLDKEKKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFVEKMQTGGDLNLIGQF 223
Query: 443 GVGFYSSYLVADRV-TVTLNT*REQYVWD 526
GVGFYS YLVAD V ++ + +Q+VW+
Sbjct: 224 GVGFYSVYLVADYVEVISKHNDDKQHVWE 252
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 44.8 bits (101), Expect = 5e-05
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +3
Query: 57 AVKKTGEMETQPAEVKPSRSRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIRYES 236
A K E + E + SRL L + H +E+FLREL+SN+SDALDK+R+
Sbjct: 332 AEKAEETAEEEKFEYQAEVSRLMDLIVHSLYSH----KEVFLRELVSNASDALDKLRFLG 387
Query: 237 LTDPS 251
+TD S
Sbjct: 388 VTDSS 392
Score = 39.9 bits (89), Expect = 0.001
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Frame = +2
Query: 233 ISHGSVKIDSGKELYIKIIPNKTRALLR-SSIRFGMTKADLVN----IWEPSRNLVLK-L 394
++ S+ D G EL I+I P+ + + GMTK +L + I + + LK L
Sbjct: 388 VTDSSLLADGG-ELEIRIKPDPDAGTITITDTGIGMTKDELKDCLGTIAQSGTSKFLKAL 446
Query: 395 SWRLSSRCRHQHDXQFGVGFYSSYLVADRVTVTLNT*R--EQYVWD 526
+ QFGVGFYS++LVA++V V+ + + +QYVW+
Sbjct: 447 KENKDLGADNGLIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWE 492
>11_08_0084 + 28260647-28262575
Length = 642
Score = 36.7 bits (81), Expect = 0.012
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = +3
Query: 141 PDHQHLLLQQEIFLRELISNSSDALDKIRYESLTD--PSKSIVA-KSCTSRSFPTRRGHS 311
PDH LL Q+ F + L S+ S A S +D PS+ ++ T+++FPT HS
Sbjct: 49 PDHPALLRAQQPFAQILASSPSSAAGASSSSSSSDAPPSRPFFDDEAATAKTFPTAAVHS 108
Query: 312 YDHR 323
DH+
Sbjct: 109 VDHQ 112
>02_05_0337 -
28060009-28060716,28061055-28061498,28061732-28061793,
28061896-28062007,28062144-28062263
Length = 481
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -2
Query: 434 NHADVGTCLRASMKALVPDFAMVPKCSPNRPWSYQTGSMIVRVPSS 297
N A G+ RA+ LVP FA P+ S + PW + +P S
Sbjct: 286 NIATSGSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRS 331
>12_02_1070 - 25814741-25815850
Length = 369
Score = 29.5 bits (63), Expect = 1.9
Identities = 24/84 (28%), Positives = 36/84 (42%)
Frame = +3
Query: 48 KQKAVKKTGEMETQPAEVKPSRSRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIR 227
+Q + + T +E KP R LR P+ + L LRE +S +D D +
Sbjct: 154 QQASSSSSSSSATSSSEPKPLRRLLRRGPKPPEPEPSLSLP--LLREPVSVPADEPDTTK 211
Query: 228 YESLTDPSKSIVAKSCTSRSFPTR 299
++ LT PS S R PT+
Sbjct: 212 HDKLTPPSPSTQQLPPKIRLSPTQ 235
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 371 SRNLVLKLSWRLSSRCRHQHDXQFGVGFYSSYLVADRV 484
SR+L +++W C HQHD F S+ + DRV
Sbjct: 586 SRHLSDEINWSAQDMC-HQHDESFRGCMQSNMFIRDRV 622
>01_06_0556 +
30207124-30207581,30207692-30207901,30208016-30208100,
30208517-30208676,30208768-30208844,30208985-30209032,
30209504-30209594,30209703-30210004,30210214-30210495,
30210695-30211011,30211113-30211273,30211556-30211665,
30211752-30211902,30212438-30212578,30212688-30212857,
30213485-30213817,30213981-30214271,30214356-30214439,
30214620-30214753,30214946-30215173,30215273-30215444,
30215621-30215875,30215963-30216232
Length = 1509
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 347 RPWSYQTGSMIVRVPSSCWE*S*CTALCHY 258
RPW++ +++VR+PSS +E A+ +Y
Sbjct: 638 RPWTFALPNVLVRIPSSLFESIIWVAITYY 667
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = -2
Query: 140 DIAERSQP---GTRRFHLRWLCLHFSGFLYCFLFN 45
D A QP G RR+H ++ L F FL+C + +
Sbjct: 69 DHASSRQPPLGGMRRYHFKFKLLSFGHFLFCIVLS 103
>05_03_0602 - 16048871-16049062,16050571-16050703,16050894-16051183
Length = 204
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -3
Query: 292 GNDLDVQLFATIDFDGSVRDSYLILSKASDELEISSRRK 176
G DL ++ +DF G +YL++S S + I++R +
Sbjct: 124 GQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMR 162
>09_04_0072 + 14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 233 ISHGSVK-IDSGKELYIKIIPNKTRALLRSSIRFGMTKADLVNIWEPS-RNLVLKLS 397
+S SVK +D GK+ Y+ + R + + TK W P + L+ +LS
Sbjct: 884 LSDSSVKYVDVGKDTYLLEVSENLRGSVPHNYELQSTKKGFYRYWTPEVKELISELS 940
>09_02_0355 - 7727082-7727323,7728036-7728126
Length = 110
Score = 27.1 bits (57), Expect = 10.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 320 SIRFGMTKADLVNIWEPSRNLVLKLSWRLSSRCRHQHDXQ 439
S+R T+A +N+ +R L LSW++ R HD +
Sbjct: 33 SLREAETEAKKMNMDLTTREYDLLLSWQIEGRANRVHDGE 72
>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
Length = 1821
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -1
Query: 354 TKSALVIPNRIDDRKSALVLLGMILMYSSL-PLSILTDP*EIHT*FCLKRPMNWKSA 187
+KS L+IPN +DD S L+ SS+ +S +T E+H F ++ W+ A
Sbjct: 778 SKSDLIIPNGVDDLVSLQHLVAAEKACSSITSISKMTSLQELHN-FGVQNSSGWEIA 833
>03_03_0251 - 15849211-15851457
Length = 748
Score = 27.1 bits (57), Expect = 10.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 114 SRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIRYESLTDPSKS 257
+++RSL YVPD+ +L E +E I N+ I + + P ++
Sbjct: 650 AKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPRT 697
>03_01_0408 + 3151984-3152666,3156061-3156368,3157594-3157946
Length = 447
Score = 27.1 bits (57), Expect = 10.0
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -3
Query: 295 VGNDLDVQLFATIDFDGSVRD---SYLILSKASDELEISSRRKISCWSKR 155
VG+D L T + G R YL +S DEL+ SR++ S SKR
Sbjct: 392 VGSDNSPLLVETDNRTGEKRRILYGYLAISSDMDELDSDSRKRASLKSKR 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,523,053
Number of Sequences: 37544
Number of extensions: 314955
Number of successful extensions: 807
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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