Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021308
(552 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0) 47 9e-06
SB_22016| Best HMM Match : HSP90 (HMM E-Value=0) 43 1e-04
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10) 40 0.002
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_16279| Best HMM Match : DNA_pol_viral_C (HMM E-Value=3.6) 29 3.3
SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93) 28 4.4
SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 855
Score = 47.2 bits (107), Expect = 9e-06
Identities = 24/30 (80%), Positives = 25/30 (83%)
Frame = +3
Query: 156 LLLQQEIFLRELISNSSDALDKIRYESLTD 245
L +EIFLRELISNSSDALDKIR SLTD
Sbjct: 96 LYRNKEIFLRELISNSSDALDKIRLMSLTD 125
>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
Length = 581
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/31 (61%), Positives = 25/31 (80%), Gaps = 1/31 (3%)
Frame = +2
Query: 437 QFGVGFYSSYLVADRVTVTL-NT*REQYVWD 526
QFGVGFYS+YLVA++V VT + EQY+W+
Sbjct: 69 QFGVGFYSAYLVAEKVVVTTKHNDDEQYIWE 99
>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
Length = 739
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 289 SQQDEGTLTIIDP-VWYDQGRFGEHLGTIAKSGTKAFMEALKQVPTSA 429
+ Q+ GT TI D V + +HLG IAKSG+K FME LK S+
Sbjct: 124 TDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFMEKLKNEARSS 171
Score = 35.5 bits (78), Expect = 0.029
Identities = 14/24 (58%), Positives = 22/24 (91%)
Frame = +3
Query: 171 EIFLRELISNSSDALDKIRYESLT 242
++F+RE+ISN+SDAL+K+R+ LT
Sbjct: 84 QVFIREVISNASDALEKVRHFFLT 107
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Frame = +2
Query: 401 RLSSRCRHQHDX---QFGVGFYSSYLVADRVTV 490
+L + R H+ QFGVGFYS+++VAD+V V
Sbjct: 163 KLKNEARSSHENIIGQFGVGFYSTFMVADKVDV 195
>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +3
Query: 66 KTGEMETQ----PAEVKPSRSRLRSLSYVPDHQHLLLQQEIFLRELISNSSDALDKIRYE 233
+ GE+E Q A++ R R+R V H+++LLQ++I ++ N D L K
Sbjct: 105 RVGEVEKQVCAMEAQINDQRKRMRGSKDVAHHKYILLQKQI---RVMQNRLDNLSKKFNH 161
Query: 234 SLTD 245
++T+
Sbjct: 162 AMTN 165
>SB_16279| Best HMM Match : DNA_pol_viral_C (HMM E-Value=3.6)
Length = 360
Score = 28.7 bits (61), Expect = 3.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = -1
Query: 327 RIDDRKSALVLLGMILMYSSLPLSILTDP*EIHT*FCLKRPMNWKSAHE 181
R + K LGM+ Y+ L+I T +H P NW AHE
Sbjct: 31 RPSNLKELQAFLGMLNYYACYILNITTILSPLHQLLVKDTPWNWSEAHE 79
>SB_49759| Best HMM Match : bZIP_1 (HMM E-Value=0.93)
Length = 316
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -2
Query: 542 RAS*EDPTRIALVMCLE*QSRGQRPSNWSRSQHRTXN-HADVGTCLRASM 396
RA DP + +L++ + SRG R S+ ++S+H + + H+DV +S+
Sbjct: 24 RAEHSDPGQRSLLLDYDIPSRGPRTSSPAKSEHTSHSGHSDVSHISNSSV 73
>SB_45733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 28.3 bits (60), Expect = 4.4
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +3
Query: 111 RSRLRS-LSYVPDHQHL-LLQQEIFLRELISNSSDALDKIRYESLTDPSKSIVAKSCTSR 284
RS++ S L+ + D Q+ LLQ+EI LRE + AL K++ E L + +S + T R
Sbjct: 305 RSQMASRLAEISDEQNKKLLQKEIRLREEAQSKFMALKKVK-EKLREEQESRLTFEKTLR 363
Query: 285 SFPTRRGHS 311
RR S
Sbjct: 364 EEMERRWQS 372
>SB_13852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 846
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -2
Query: 542 RAS*EDPTRIALVMCLE*QSRGQRPSNWSRSQHRTXN-HADV 420
RA DP + +L++ + SRG R S+ ++S+H + + H+DV
Sbjct: 554 RAEHSDPGQRSLLLDYDIPSRGPRTSSPAKSEHTSHSGHSDV 595
>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/92 (21%), Positives = 42/92 (45%), Gaps = 6/92 (6%)
Frame = +3
Query: 45 IKQKAVKKTGEMETQPAEVKPSRSRLRSLSYVPDHQHLLLQQEIF------LRELISNSS 206
+KQ + G +E PA+ P + + + +P + ++ F L ++S +S
Sbjct: 266 LKQSPAQNQGTVEETPAQANPPKEKPTIM--IPPKRKIVGSSTFFMDTNDDLPTVLSGNS 323
Query: 207 DALDKIRYESLTDPSKSIVAKSCTSRSFPTRR 302
D+L+++ D SK + T +S P ++
Sbjct: 324 DSLEQV------DQSKKAAEEKSTEQSVPVKK 349
>SB_3516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 27.5 bits (58), Expect = 7.7
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 107 RFHLRW-LCLHFSGFLYCFLFNSHKMTEGFYTRV 9
R H+R +C F G L CFLF+ H M F+ R+
Sbjct: 230 RIHIRISICAPF-GTLLCFLFDVHVMGAYFHQRL 262
>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 129 LSYVPDHQHLLLQQ--EIFLRELISNSSDALDKIRYESLTDPSKSI 260
L+ PD+ HL L Q E+F L + + D L K+ + L PS +
Sbjct: 783 LTMAPDYDHLTLMQKVEVFEHALANTNGDDLAKLLW--LKSPSSEV 826
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,700,394
Number of Sequences: 59808
Number of extensions: 362623
Number of successful extensions: 890
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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