Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021308
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   3.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 107 RFHLRWLCLHFSGFLYCFLFNSHKMTEG 24
           R   R  C+++  F Y    NS K T+G
Sbjct: 488 RLKARRACMNYERFTYKININSDKETKG 515


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 107 RFHLRWLCLHFSGFLYCFLFNSHKMTEG 24
           R   R  C+++  F Y    NS K T+G
Sbjct: 488 RLKARRACMNYERFTYKININSDKETKG 515


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 65   LYCFLFNSHKMTEG 24
            L+ F+++ H MTEG
Sbjct: 1737 LHSFMYHEHAMTEG 1750


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 65   LYCFLFNSHKMTEG 24
            L+ F+++ H MTEG
Sbjct: 1733 LHSFMYHEHAMTEG 1746


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -1

Query: 354 TKSALVIPNRIDDRKSALVLLGMILMYSSL 265
           T S +++  R+ DR++ LVL  M L  + +
Sbjct: 273 TTSKMMVSPRLYDRQNGLVLSRMNLTLAKM 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,181
Number of Sequences: 438
Number of extensions: 3208
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)