Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021307
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    48   7e-07
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   3.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   3.1  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    25   5.4  
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   9.4  
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   9.4  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 48.4 bits (110), Expect = 7e-07
 Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
 Frame = +2

Query: 380 CFVRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVF 502
           CF R      V+S WRGN ANV+R    QA+NFAFKDK+K++F
Sbjct: 77  CFKRTAAEEGVISLWRGNTANVLRYFPTQALNFAFKDKFKKMF 119


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 430 LRQRHQVFRPGGQLRLQGQVQAGVPRRVDK 519
           +R+ H+V RP    RL+  V+A +P +V+K
Sbjct: 630 IRRLHKVLRPFLLRRLKKDVEAELPDKVEK 659


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 91  YEITPNLLFKNQELVFRDPPSACAATPTSTY 183
           YE+  N  F N       PP AC+   TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 228 PIRSRSLRTPGLAGSPPRLQDRR 296
           PI S S R     GSPPR  D R
Sbjct: 28  PINSESTRITPQHGSPPRFGDHR 50


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 103 PNLLFKNQELVFRDPPSACAATPT 174
           P  + K  E + RDPP    A PT
Sbjct: 4   PKRIIKEIETLTRDPPPGIVAAPT 27


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 285 GDAAEIPPAQESLANATGSARFDILFDYVI 196
           G  A+I   + SL +  G+ RFD +  YVI
Sbjct: 102 GPNADIHQMEVSLESGDGAHRFDFMNKYVI 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,185,728
Number of Sequences: 5004
Number of extensions: 43456
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)