Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021307
(533 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887 47 1e-05
02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309 44 8e-05
11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733 42 2e-04
05_06_0233 + 26599068-26599466,26601214-26601829,26601871-266019... 34 0.063
03_01_0644 - 4719954-4720022,4720445-4720912,4721009-4721312,472... 34 0.063
05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127 29 3.1
06_03_1131 + 27872870-27872958,27873036-27873281,27874058-278741... 28 5.4
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 27 7.2
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 9.5
02_05_0182 + 26530799-26530852,26531677-26532927,26533250-265333... 27 9.5
>05_03_0396 - 13477465-13477761,13477970-13478341,13478414-13478887
Length = 380
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +2
Query: 359 PSTRVS*CFVR-IPRSRVLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVF 502
P ++ CF R I V++ WRGN ANVIR QA+NFAFKD +K++F
Sbjct: 123 PYKGIADCFGRTIKDEGVIALWRGNTANVIRYFPTQALNFAFKDHFKRMF 172
>02_05_0538 + 29841801-29842280,29842559-29842930,29843013-29843309
Length = 382
Score = 44.0 bits (99), Expect = 8e-05
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +2
Query: 359 PSTRVS*CFVR-IPRSRVLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVF 502
P + CF R I S WRGN ANVIR QA+NFAFKD +K++F
Sbjct: 125 PYKGIGDCFGRTIKDEGFASLWRGNTANVIRYFPTQALNFAFKDYFKRLF 174
>11_06_0633 + 25681756-25682061,25682961-25683329,25683419-25683733
Length = 329
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = +2
Query: 356 RPSTRVS*CFVRIPRSR-VLSFWRGNFANVIR-SSDQAVNFAFKDKYKQVF 502
RP ++ F R+ R V + WRGN ANVIR QA NFAFK +K +F
Sbjct: 66 RPYRGIADAFGRVLREEGVAALWRGNQANVIRYFPTQAFNFAFKGYFKSIF 116
>05_06_0233 +
26599068-26599466,26601214-26601829,26601871-26601917,
26602101-26602268
Length = 409
Score = 34.3 bits (75), Expect = 0.063
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +2
Query: 380 CFVRIPRSR-VLSFWRGNFANVIR-SSDQAVNFAFKDKYKQV 499
C R R VLS WRGN VIR A+NF+ KD Y+ +
Sbjct: 98 CVARTVRDEGVLSLWRGNGTAVIRYYPSVALNFSLKDLYRSI 139
>03_01_0644 -
4719954-4720022,4720445-4720912,4721009-4721312,
4722321-4722745
Length = 421
Score = 34.3 bits (75), Expect = 0.063
Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Frame = +2
Query: 416 FWRGNFANVIRSSD-QAVNFAFKDKYKQVFL 505
FW+GNF N++R++ +AVNF D Y++ L
Sbjct: 180 FWKGNFVNILRTAPFKAVNFYAYDTYRKQLL 210
>05_04_0386 + 20822376-20822982,20823715-20824244,20824315-20825127
Length = 649
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -3
Query: 123 IFEQEIWSNFVITGAXRVGVCLF*NSIDHVLSQFCPVDLV 4
+FEQ I SN ++T A GV NS+ H+ + ++LV
Sbjct: 20 LFEQVIGSNVIVTEAPLTGVTAEGNSVLHIAASHGFLELV 59
>06_03_1131 +
27872870-27872958,27873036-27873281,27874058-27874163,
27874665-27875209,27875455-27875914,27876234-27876319,
27877092-27877194
Length = 544
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -2
Query: 388 DEASRYPCTWSAAICLLTCCTXSSIDTRWVLRRSWRR 278
+ + YP WSA + L + CT S I L+ W +
Sbjct: 217 ESVNSYPWNWSAWLELQSLCTSSDILNNLNLKNHWMK 253
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +1
Query: 118 KNQELVFRDPPSACAATPTSTYSPSEDHIIEQN 216
K + + F DP C T T +P DH+ +N
Sbjct: 604 KKEPIGFLDPTQICQTQHTVTLAPGSDHLKGKN 636
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.1 bits (57), Expect = 9.5
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Frame = -3
Query: 522 LLVNTPR-NTCLYLSLKAKLTAWSEDLMTL-----AKLPRQNERTLLLGIRTKHHDTL 367
LL TP+ NTCL++S ++ +DLM L AK+ E LL + T HD L
Sbjct: 40 LLGTTPQGNTCLHISSIHGRESFCKDLMVLSPCLVAKVNLYGETPLLTAV-TSGHDAL 96
>02_05_0182 +
26530799-26530852,26531677-26532927,26533250-26533335,
26533673-26533733
Length = 483
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -2
Query: 388 DEASRYPCTWSAAICLLTCCTXSSIDTRWVLRRSWRR 278
+ + YP WSA + L + CT S I ++ W +
Sbjct: 88 ESVNSYPWNWSAWLELQSLCTSSDILNNLNIKNHWMK 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,210
Number of Sequences: 37544
Number of extensions: 344419
Number of successful extensions: 1118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1116
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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