Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021307
         (533 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)           30   1.4  
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.4  
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   5.5  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   7.3  
SB_32235| Best HMM Match : Peptidase_A17 (HMM E-Value=4.2e-08)         27   7.3  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   27   7.3  

>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 25/43 (58%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +2

Query: 380 CFVRIPRSR-VLSFWRGNFANVIR-SSDQAVNFAFKDKYKQVF 502
           C  R  RS   LSFWRGN AN IR    QA+NFAFKD+ K +F
Sbjct: 59  CTSRTYRSEGFLSFWRGNLANCIRYFPTQALNFAFKDQVKALF 101


>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
          Length = 965

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -3

Query: 276 AEIPPAQESLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 142
           A++PP +  +A +  +  FD+   + I TR   RGG   ++ WG+
Sbjct: 538 ADLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581


>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1616

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 276  AEIPPAQESLANATGSARFDILFDYVIFTR*ICRGGSCGTRGWGI 142
            A++PP +  +A    +  FD+   + I TR   RGG   ++ WG+
Sbjct: 1265 ADLPPDRTEVAPPFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 1308


>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 792

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 49  ISKKAHTYPLCSRDYEITPNLLFKNQELV----FRDPPSACAATPTSTYSPS 192
           ++ ++  Y  C  + E +P +       +    ++D  SAC A P  TY PS
Sbjct: 106 LTDESELYGYCQSNGEWSPAMYTSRHRCMCHAGYQDTVSACTACPRGTYKPS 157


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +1

Query: 97   ITPN----LLFKNQELVFRDPPSACAATPTSTYSPSEDHII 207
            +TPN    LL +  +   R+P SA      S YSPSE  I+
Sbjct: 963  LTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIV 1003


>SB_32235| Best HMM Match : Peptidase_A17 (HMM E-Value=4.2e-08)
          Length = 525

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 440 RWRSYHARMKEPCSLGYGRSITIPLYLVGGDLLADVLYXEQH 315
           RW+++ +R+ E   +    S   PLY+    LLA+ L  E H
Sbjct: 172 RWKAWESRLPERIEVPRRISGHYPLYIPPRTLLAEKLVMEAH 213


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 76  LCSRDYEITPNLLFKN---QELVFRDPPSACAATPTSTYSPSED 198
           LC +D E++P LLF N   +++  R  P    A P++  S  ED
Sbjct: 54  LCGKDQEVSPKLLFGNDLAKQVRDRKKPPVW-ANPSAPQSAKED 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,899
Number of Sequences: 59808
Number of extensions: 371894
Number of successful extensions: 894
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)