Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021307
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-8|CAD89757.1|  207|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical pr...    52   2e-07
X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP translo...    52   2e-07
Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical pr...    50   1e-06
Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical pr...    49   2e-06
U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical pr...    49   2e-06
AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical ...    48   6e-06
U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical pr...    46   1e-05
Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical pr...    32   0.30 
Z82059-7|CAD89756.1|  128|Caenorhabditis elegans Hypothetical pr...    30   0.91 
Z81553-2|CAB04491.2|  373|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    28   3.7  
Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily a...    28   4.8  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    28   4.8  
U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical ...    27   6.4  

>Z82059-8|CAD89757.1|  207|Caenorhabditis elegans Hypothetical
           protein T27E9.1c protein.
          Length = 207

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLGVLTRRR 526
           +R+P+ + V + WRGN ANVIR    QA+NFAFKD YK +FL  L +++
Sbjct: 63  IRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTYKAIFLEGLDKKK 111



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIECQCCSXYSTSASR--SPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE          AS+  +   +YKGI+ +L   PKEQG
Sbjct: 25  VSKTAVAPIERVKLLLQVQDASKAIAVDKRYKGIMDVLIRVPKEQG 70


>Z82059-6|CAB04874.1|  300|Caenorhabditis elegans Hypothetical
           protein T27E9.1a protein.
          Length = 300

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLGVLTRRR 526
           +R+P+ + V + WRGN ANVIR    QA+NFAFKD YK +FL  L +++
Sbjct: 63  IRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTYKAIFLEGLDKKK 111



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIECQCCSXYSTSASR--SPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE          AS+  +   +YKGI+ +L   PKEQG
Sbjct: 25  VSKTAVAPIERVKLLLQVQDASKAIAVDKRYKGIMDVLIRVPKEQG 70


>X76112-1|CAA53718.1|  300|Caenorhabditis elegans ADP/ATP
           translocase protein.
          Length = 300

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 25/49 (51%), Positives = 35/49 (71%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLGVLTRRR 526
           +R+P+ + V + WRGN ANVIR    QA+NFAFKD YK +FL  L +++
Sbjct: 63  IRVPKEQGVAALWRGNLANVIRYFPTQAMNFAFKDTYKAIFLEGLDKKK 111



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIECQCCSXYSTSASR--SPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE          AS+  +   +YKGI+ +L   PKEQG
Sbjct: 25  VSKTAVAPIERVKLLLQVQDASKAIAVDKRYKGIMDVLIRVPKEQG 70


>Z68882-2|CAA93110.1|  306|Caenorhabditis elegans Hypothetical
           protein C47E12.2 protein.
          Length = 306

 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
 Frame = +2

Query: 383 FVRIPRSR-VLSFWRGNFANVIR-SSDQAVNFAFKDKYKQVFLGVLTR 520
           FVR+P+ +  +SFWRGN  NVIR    QA NFAF D YK + L  + R
Sbjct: 71  FVRVPKEQGFVSFWRGNMTNVIRYFPTQAFNFAFNDLYKSILLKNMKR 118


>Z68218-2|CAA92472.1|  313|Caenorhabditis elegans Hypothetical
           protein K01H12.2 protein.
          Length = 313

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLGVLTRRR 526
           VR+P+ +   + WRGN ANVIR    QA+NFAFKD YK +F   L +++
Sbjct: 76  VRVPKEQGYAALWRGNLANVIRYFPTQALNFAFKDTYKNIFQKGLDKKK 124



 Score = 31.1 bits (67), Expect = 0.52
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIE--CQCCSXYSTSASRSPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE           S + +   +YKGIV +L   PKEQG
Sbjct: 38  VSKTAVAPIERVKLLLQVQDASLTIAADKRYKGIVDVLVRVPKEQG 83


>U80931-5|AAB38001.1|  313|Caenorhabditis elegans Hypothetical
           protein T01B11.4 protein.
          Length = 313

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLGVLTRRR 526
           VR+P+ +   + WRGN ANVIR    QA+NFAFKD YK +F   L +++
Sbjct: 76  VRVPKEQGYAALWRGNLANVIRYFPTQALNFAFKDTYKNIFQKGLDKKK 124



 Score = 31.1 bits (67), Expect = 0.52
 Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIE--CQCCSXYSTSASRSPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE           S + +   +YKGIV +L   PKEQG
Sbjct: 38  VSKTAVAPIERVKLLLQVQDASLTIAADKRYKGIVDVLVRVPKEQG 83


>AF003141-4|AAK21485.1|  300|Caenorhabditis elegans Hypothetical
           protein W02D3.6 protein.
          Length = 300

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 22/40 (55%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
 Frame = +2

Query: 389 RIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVF 502
           R+P+ +   +FWRGN ANV+R    QA+NFAFKD YK++F
Sbjct: 64  RVPKEQGYAAFWRGNLANVLRYFPTQALNFAFKDTYKKMF 103



 Score = 31.1 bits (67), Expect = 0.52
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIE--CQCCSXYSTSASRSPPTKYKGIV-MLRPYPKEQG 408
           +SKTAVAPIE           S + +   KYKGI+ +L   PKEQG
Sbjct: 25  ISKTAVAPIERVKLLLQVSDVSETVTADKKYKGIMDVLARVPKEQG 70


>U64842-4|AAB37086.2|  306|Caenorhabditis elegans Hypothetical
           protein F25B4.7 protein.
          Length = 306

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 19/44 (43%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
 Frame = +2

Query: 380 CFVRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFL 505
           CF+R+PR +  LSFWRGN+ N++RS S +++  +FK+ +++  L
Sbjct: 67  CFIRVPREQGFLSFWRGNWVNILRSCSQESLGLSFKEFFRKYSL 110


>Z49207-2|CAA89069.1|  298|Caenorhabditis elegans Hypothetical
           protein R07E3.4 protein.
          Length = 298

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +2

Query: 410 LSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFL 505
           ++ WRGN A V R   +  +NFAF+D Y+   L
Sbjct: 71  MALWRGNGAGVARCLPNHTLNFAFRDIYRNTLL 103


>Z82059-7|CAD89756.1|  128|Caenorhabditis elegans Hypothetical
           protein T27E9.1b protein.
          Length = 128

 Score = 30.3 bits (65), Expect = 0.91
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 VSKTAVAPIECQCCSXYSTSASR--SPPTKYKGIV-MLRPYPKEQG 408
           VSKTAVAPIE          AS+  +   +YKGI+ +L   PKEQG
Sbjct: 25  VSKTAVAPIERVKLLLQVQDASKAIAVDKRYKGIMDVLIRVPKEQG 70



 Score = 30.3 bits (65), Expect = 0.91
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 386 VRIPRSR-VLSFWRGNFANVIR 448
           +R+P+ + V + WRGN ANVIR
Sbjct: 63  IRVPKEQGVAALWRGNLANVIR 84


>Z81553-2|CAB04491.2|  373|Caenorhabditis elegans Hypothetical
           protein F56H6.2 protein.
          Length = 373

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 68  PTLXAPVITKLLQISCSKIRS*CFVIPHPRVPQLPPRHI 184
           PTL  P +  L + +C K+ S    +     P+LPP+ I
Sbjct: 89  PTLPVPTLRMLNEPTCQKVFSSWLKVSKEPQPKLPPKKI 127


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 407 VLSFWRGNFANVIR-SSDQAVNFAFKDKYKQ 496
           + SFWRGN  NVI+ + + A+ F   D+ K+
Sbjct: 297 IKSFWRGNGINVIKIAPESAMKFMCYDQIKR 327


>Z70208-6|CAA94138.1|  183|Caenorhabditis elegans Hypothetical
           protein F54B11.6 protein.
          Length = 183

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -2

Query: 397 WDTDEASRYPCTWSAAICLLTCCTXSSIDTRWVLRRSWRRGGDPASPGVLSE 242
           W  +  + Y C W+ A C + C        R   RR    GG P     ++E
Sbjct: 126 WQCNSEAIYHCCWNTAYCSVECQQGHWQIHRKFCRRKKSNGGAPGPVQPIAE 177


>AF125953-1|AAD14702.2|  397|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 304 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 70  YPLCSRDYEITPNL-LFKNQELVFRDPPSACA-ATPTSTYSPSEDHIIEQNVE 222
           YPL  RD  + PN  L       FR  P   A A P+ST   SE H   ++VE
Sbjct: 105 YPLMKRD-NVFPNFALPTTTRAAFRIGPQPIASADPSSTPGSSEHHSDTEDVE 156


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 195 RSHNRTKCRTSPIRSRSLRTPGLAGSPPRLQDRRSTHRVS 314
           R  +R++ R +P R    R+     SPPR +DRR+  R S
Sbjct: 87  RRRSRSRDRGAPRRRSRTRSRDRRRSPPRRRDRRTPPRRS 126


>U29154-2|AAA68418.2|  220|Caenorhabditis elegans Hypothetical
           protein T07F12.2 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 106 NLLFKNQELVFRDPPSACAATPTSTYSPS 192
           N  F+N E+V  DP   C A     ++PS
Sbjct: 150 NKTFRNLEMVLADPVHGCEALRNEIFAPS 178


>AF003389-8|AAC71131.1|  214|Caenorhabditis elegans Hypothetical
           protein F23H11.1 protein.
          Length = 214

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = -2

Query: 397 WDTDEASRYPCTWSAAICLLTCCTXSSIDTRWVLRRSWRRGGDPASPGV 251
           W  D  + Y C W+ A C + C        R   RR  +    P +P V
Sbjct: 152 WSCDNEAIYHCCWNTAYCSVECQQGHWQTHRKFCRRK-KGNNAPGAPSV 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,545,067
Number of Sequences: 27780
Number of extensions: 268251
Number of successful extensions: 713
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)