Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021307
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    83   1e-18
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    83   1e-18
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   4.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   7.9  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
 Frame = +2

Query: 215 MSNLADPVAFAKDSWAGG----IXXXXXXXXXXXXXVNAAPSTARQQADRRRPSTRVS*C 382
           MS LADPVAFAKD  AGG    I             +      ++Q ++ +R    +  C
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMID-C 59

Query: 383 FVRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLG 508
           FVRIP+ +  LS+WRGN ANVIR    QA+NFAFKDKYKQVFLG
Sbjct: 60  FVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG 103


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 83.4 bits (197), Expect = 1e-18
 Identities = 51/104 (49%), Positives = 62/104 (59%), Gaps = 6/104 (5%)
 Frame = +2

Query: 215 MSNLADPVAFAKDSWAGG----IXXXXXXXXXXXXXVNAAPSTARQQADRRRPSTRVS*C 382
           MS LADPVAFAKD  AGG    I             +      ++Q ++ +R    +  C
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMID-C 59

Query: 383 FVRIPRSR-VLSFWRGNFANVIRS-SDQAVNFAFKDKYKQVFLG 508
           FVRIP+ +  LS+WRGN ANVIR    QA+NFAFKDKYKQVFLG
Sbjct: 60  FVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLG 103


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 210 TKCRTSPIRSRSLRTPGLAGSPPRL 284
           T+ + +PI  R+  TP     PP L
Sbjct: 193 TRDKVAPILVRARETPNYTACPPTL 217


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = -3

Query: 480 LKAKLTAWSEDLMTLAKLPRQNERTLLLGIRT--KHHDTLVLGRRRS 346
           ++ +L  W+++++ +  L R  E   L+G R   ++ DTL  G R S
Sbjct: 16  IRRELLRWTKNMVFVVGLERVAEE--LMGRRRWKQYQDTLYSGTRSS 60


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -2

Query: 412 KNPAPWDTD 386
           K P PW+TD
Sbjct: 123 KEPPPWETD 131


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 140 VIPHPRVPQLPPRHIHLVKIT 202
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,908
Number of Sequences: 438
Number of extensions: 3436
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)