Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021306
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.015
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.027
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 31 0.19
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.33
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 29 0.44
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 29 0.44
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 0.76
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.76
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 28 1.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 1.3
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 1.8
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 3.1
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 4.1
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 26 4.1
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||... 26 4.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.4
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr... 25 7.1
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2... 25 7.1
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 7.1
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 25 7.1
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.4
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.4
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.3 bits (75), Expect = 0.015
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV +A AQ A+ + N +KGK + V A K E
Sbjct: 303 FGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHE 341
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
+GFV F SA AI+ NG + K + V
Sbjct: 210 YGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FG++Q+ SA++A++K NG G+N+ V DK
Sbjct: 382 FGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDK 418
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
++V L++ T ELYD+F Q G + D IV +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRD 274
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
F F+ F + SA +AI NGS F+G + V
Sbjct: 68 FAFITFENKCSADNAIASLNGSSFQGNTLKV 98
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 29.9 bits (64), Expect = 0.33
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKI 236
+YV L +N T +EL YF+ +G+I
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEI 202
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 367
G V+F+ E ++A+ NG V KG+ + +R D
Sbjct: 137 GVVEFSTEEDMRNALTSLNGEVIKGQAVTLREDPD 171
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
R++VG + T E++ D+F YG+I
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQI 30
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FGFV+ + A+D + G F G I V A
Sbjct: 39 FGFVEVEDARDARDIVNDFQGKEFMGSRIVVEPA 72
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 29.5 bits (63), Expect = 0.44
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 355
FGFV+F +++SA A+ NG V G + ++
Sbjct: 667 FGFVEFKDKASAVAAMHAMNGFVLDGHKLEIK 698
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FG VQF E+ A +I+K NG + G+ + + A
Sbjct: 322 FGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.7 bits (61), Expect = 0.76
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
++++G L+ TT + L DYF Q+G++
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEV 189
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +3
Query: 135 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
+Q+ TA +++VG + + T EE ++F Q+G++
Sbjct: 242 EQEKTA--KMFVGGVPGDCTEEEFRNFFNQFGRV 273
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIVNEILD 266
IYVG + + EE+ +F +YG+++ I +LD
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESIF-RRLLD 52
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 150 AHLRIYVGALSDNTTVEELYDYFIQYGKID 239
A IY+G D+ T+E L + F ++G+I+
Sbjct: 412 ASRNIYIGNADDSLTIERLKEDFEEFGEIE 441
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 150 AHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
A +Y +SD+ T EEL QYG+I+ I
Sbjct: 498 ASRNVYFSHISDSLTTEELELILRQYGEIESI 529
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 153 HLRIYVGALSDNTTVEELYDYFIQY 227
H R++VG L ++ E LY F +Y
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEY 53
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
F FV + +A++A+ NG+ G+ I V A K
Sbjct: 150 FAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSK 186
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKI 236
+++ LS T EE+YD F +YG +
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPV 38
>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 265
Score = 26.2 bits (55), Expect = 4.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = -1
Query: 403 LDISLRFQHLAFISCGSDRDIFSFEYATISFFYCILCT*FFGELHK--SKISLTIIPSIF 230
L ISLRF AF + +R SF +LC + E +K ++ L+ IP +F
Sbjct: 31 LSISLRFIEYAFETYQPERLAMSFNGGKDCLVLFLLCIYYLKEKYKEQAQAKLSNIPFVF 90
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 402 WIYRYGFNISLLSVAALTGIFFPLNTLPLAFFIASCALDSS 280
W R+ + L +AA G+ +N P F+ASC D +
Sbjct: 205 WDIRFP-KLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKT 244
>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
3|||Manual
Length = 220
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 102 PLLFIYYNCIFVKL*ANSDFFAVTKILFNV-NITC 1
P FI++ C+F + + +DF + ILF + +TC
Sbjct: 128 PFNFIFFACLFFRKASFTDFSLMGWILFGIWCLTC 162
>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 413
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 430 DTQMEDESEEAYDNYGNNNDHGFQ 501
D + ES E YD YG N+D Q
Sbjct: 58 DILKDPESREMYDMYGMNSDSNSQ 81
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 120 DRIDMKQKSTAHLR-IYVGALSDNTTVEELYDYFIQYGKIDG--IIVNEILDLC 272
D +ST+ R +Y+ L NT+ E L Y ++GK+ I++ +LC
Sbjct: 283 DNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLC 336
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV FA AI++ NG + V++A + +
Sbjct: 260 FGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFRED 298
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 370 FISCGSDRDIFSFEYATISFFYC 302
FI G DIF++EY F +C
Sbjct: 53 FIGDGRGSDIFNYEYYDERFHFC 75
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIVN 254
++VG L+ + T LY+ FI +G+I + ++
Sbjct: 8 VHVGNLAPSVTESLLYNAFIPFGEIISVALH 38
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,255
Number of Sequences: 5004
Number of extensions: 48669
Number of successful extensions: 164
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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