Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021306
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 42 3e-04
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 38 0.007
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.038
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.15
SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38) 33 0.20
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 33 0.26
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.61
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.61
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 31 0.61
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.81
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 30 1.4
SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 30 1.9
SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19) 29 3.3
SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 5.7
SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 28 7.5
SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23) 28 7.5
SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07) 28 7.5
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 28 7.5
SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082) 28 7.5
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 28 7.5
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 27 9.9
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31) 27 9.9
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 27 9.9
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEM 379
NFGFVQF E A +A+ K +G + GK I VR ++++
Sbjct: 81 NFGFVQFETEKGADEAVAKEHGRIINGKKIDVRIVNSRADV 121
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 108 NLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
N +D K+ T +I++G LS NT+ E++ YF Q+GK+
Sbjct: 167 NSGAQELDGKKMVTTTKKIFIGGLSTNTSEEDMKKYFSQFGKV 209
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 35.5 bits (78), Expect = 0.038
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 358
NFG+V F +E A DA+K+ G KGK I RA
Sbjct: 18 NFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRA 51
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGI 245
+++VG LS TT E L +YF +YG++ G+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGELVGV 58
>SB_37500| Best HMM Match : RRM_1 (HMM E-Value=7.3e-38)
Length = 496
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I++G L+ NTT E L DYF Q+G I ++
Sbjct: 51 KIFIGGLNWNTTEEGLKDYFSQWGTIVDCVI 81
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
N+GFV+F ++ A DA+ + NG G+ I V
Sbjct: 37 NYGFVEFEDDRDADDAVYECNGKEMLGERILV 68
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 32.7 bits (71), Expect = 0.26
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
FGFV FA AQ A+K NG +G+ + +
Sbjct: 101 FGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.35
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 135 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
K++ +++VG L ++TT + L +YF Q+G++ + +
Sbjct: 192 KEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYI 230
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 32.3 bits (70), Expect = 0.35
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV AI+K N S G+NI V A DK+E
Sbjct: 51 FGFVLLQSADQIAPAIEKMNQSSVGGRNITVALALDKTE 89
>SB_17244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+++VG L+ TT E L +YF YG++ ++V
Sbjct: 15 KLFVGGLNRETTNETLREYFEAYGELTDVVV 45
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
+GFVQF E +A+ A+++ NG G+ + + T++ +
Sbjct: 285 YGFVQFREAEAAKRAMEQMNGFELAGRPLKIGPVTERGD 323
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 31.5 bits (68), Expect = 0.61
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 111 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
L+L +M + ++ R+YVG L + ++L+D F +YG I
Sbjct: 246 LSLMSSNMNRSNSNDCRVYVGNLPQDVREKDLHDIFYKYGHI 287
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
F FV+F + A+DA+K +G F G I V
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRV 332
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 31.1 bits (67), Expect = 0.81
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGI 245
++VG L+ T E L DYF Q+G+++ +
Sbjct: 82 VFVGGLASGTDEEGLKDYFEQFGEVESV 109
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
D+ K ++ V L +TTV+EL +YF + G++ GI
Sbjct: 227 DLMAKVIQSKKLMVQDLDFDTTVDELREYFEKCGELTGI 265
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 31.1 bits (67), Expect = 0.81
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
F FV F + + +DAI + +G F G+++ V A + +
Sbjct: 272 FAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQARSREQ 310
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
FGFV F + A A +K NG++ G+ + V ++S
Sbjct: 126 FGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQS 163
>SB_6474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKID 239
++++G L+ TT E+L +YF YG ++
Sbjct: 203 KVFIGGLAFGTTEEDLKEYFSTYGMVE 229
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
++GFV FA+ SA AI NG+ G + V A +S
Sbjct: 36 DYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQS 74
>SB_46477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6116
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/55 (25%), Positives = 23/55 (41%)
Frame = +1
Query: 370 KRDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEELKRATTGQK 534
+R++ P + P + D+ + E NY NNN K+ TT Q+
Sbjct: 5822 RRELREQLREPRIRPRKGVVDSDFQIYKREYNKNYSNNNSENSSSSNKKTTTQQQ 5876
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGI 245
+YVG L T ++L D+F Q+G++ I
Sbjct: 306 LYVGGLEGKVTEQDLRDHFYQFGELRSI 333
>SB_44482| Best HMM Match : RRM_1 (HMM E-Value=0.19)
Length = 486
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIVN 254
+YVG +SD T ++++ F +YG I+ + V+
Sbjct: 372 VYVGKISDETHKDDVWRRFRKYGPIEKVTVH 402
>SB_33542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1182
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 150 AHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
AH+R Y+ D TT E+L + + YG + G+
Sbjct: 677 AHVRKYINEGHDVTTPEQLKNAMLSYGGLQGV 708
>SB_7937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +3
Query: 135 KQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNE 257
++K T R++VG L D EE+ + F +YG++ + +N+
Sbjct: 46 ERKFTGRCRLFVGNLID-CDEEEMKEMFKKYGEVAEVFINK 85
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
+ T HL +VG L +N E++ +F +YG+++ +
Sbjct: 3 RETRHL--WVGNLPENIREEDIVKHFTRYGRVESV 35
>SB_53070| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV + SAQ+AI+ NG K + V+ K
Sbjct: 305 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPK 341
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
+GFV+F + A+DA+ NG G+ + V
Sbjct: 724 YGFVEFDDHRDAEDAVHDLNGRDLIGERVVV 754
>SB_37198| Best HMM Match : RRM_1 (HMM E-Value=7.8e-23)
Length = 362
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV + SAQ+AI+ NG K + V+ K
Sbjct: 320 FGFVSYDNVMSAQNAIQHMNGFQIGAKRLKVQLKRPK 356
>SB_30685| Best HMM Match : RRM_1 (HMM E-Value=2e-07)
Length = 349
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNEILD 266
+ +QK+ A +YV T++EL +YF GKI I++ + L+
Sbjct: 72 EARQKAKAKT-VYVKGFPKEATLDELQEYFEGKGKIVFIMMRKTLE 116
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 63 ISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYD 212
IS ++ T ADN T+ R+ K+ ++ Y G +S +ELY+
Sbjct: 312 ISDQFDSQSVNTNADNNTVRRLSSSLKTLSNCGWYWGPMSSKEAEKELYN 361
>SB_16097| Best HMM Match : 7tm_1 (HMM E-Value=0.0082)
Length = 228
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 375 SLLSVAALTGIFFPLNTLPLAFFIASCALDS 283
SL SVA + GIF N + +++F+ A+DS
Sbjct: 146 SLASVAIVVGIFLACNAIDMSYFLCK-AIDS 175
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
FGFVQF A A+++ N G+ + V A KS
Sbjct: 292 FGFVQFTNVFDAAKALEEMNAKKILGRPVAVDWAVPKS 329
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
++Y+G+L DN + E+ + F YG + + V
Sbjct: 33 KVYIGSLGDNASKREIENEFGYYGPLKDVWV 63
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV F A++A+ NG G+ + A ++E
Sbjct: 151 FGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAE 189
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
+G+V++ +ESSA A+ + + KG+ I V
Sbjct: 213 YGYVEYEQESSASTAVLTLDKTEVKGRTISV 243
>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
Length = 870
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 123 RIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNEIL 263
R +MK H + D+T V ++YD FI Y D V E L
Sbjct: 690 RWEMKILMYTHFNWHPFDRVDDTDVSKIYDTFISYSSQDASWVRETL 736
>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 496 NHDHYYFHSCHKLPHFHLP-FECLLVQ 419
+H H++ H H L H HL F CL Q
Sbjct: 118 HHHHHHLHHHHHLCHHHLSLFVCLPTQ 144
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
F FV++ +AQ A+++ NG + G+NI V
Sbjct: 145 FAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,562
Number of Sequences: 59808
Number of extensions: 331420
Number of successful extensions: 1021
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -