Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021306
(649 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 39 0.003
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 39 0.004
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 36 0.033
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 36 0.033
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 36 0.033
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 35 0.043
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 35 0.043
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 35 0.043
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 33 0.13
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 33 0.13
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 33 0.13
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.23
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.23
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.23
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.30
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 32 0.40
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 32 0.40
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 31 0.53
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 31 0.70
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 31 0.70
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 31 0.93
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p... 30 1.2
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 30 1.2
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 30 1.2
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 29 2.1
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 29 3.8
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 29 3.8
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family... 29 3.8
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 29 3.8
U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical p... 28 5.0
U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical p... 28 5.0
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.6
Z81128-3|CAB03401.1| 410|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 27 8.7
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 27 8.7
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 27 8.7
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 27 8.7
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 27 8.7
AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical ... 27 8.7
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
F FV+F+EE+ AQ A+++ NG F G+N+ V A
Sbjct: 49 FAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 38.7 bits (86), Expect = 0.004
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
F F++FAEE SAQ A+++ NG+ F G+ + V A
Sbjct: 48 FAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
+GFV F E +AQ+AI+K NG + GK +
Sbjct: 162 YGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
+GFV F E +AQ+AI+K NG + GK +
Sbjct: 99 YGFVHFETEEAAQNAIQKVNGMLLAGKKV 127
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
+GFV F E +AQ+AI+K NG + GK +
Sbjct: 162 YGFVHFETEEAAQNAIQKVNGMLLAGKKV 190
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 35.1 bits (77), Expect = 0.043
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
F FV+F EE++AQ A+ + NG F G+ + V A +++
Sbjct: 47 FAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQNRN 84
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLK 385
+GFV F E SAQ AI+K NG + K + V +++ +K
Sbjct: 187 YGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKN--IPVRAATDKSE 376
FGFV FA++ +A A++K N S+ +G + + V A KSE
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.1 bits (77), Expect = 0.043
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLK 385
+GFV F E SAQ AI+K NG + K + V +++ +K
Sbjct: 187 YGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMK 228
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKN--IPVRAATDKSE 376
FGFV FA++ +A A++K N S+ +G + + V A KSE
Sbjct: 280 FGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSE 320
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G LS +TT E+L +YF Q+G +D I++ +
Sbjct: 50 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 83
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G LS +TT E+L +YF Q+G +D I++ +
Sbjct: 70 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 103
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 33.5 bits (73), Expect = 0.13
Identities = 13/34 (38%), Positives = 25/34 (73%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G LS +TT E+L +YF Q+G +D I++ +
Sbjct: 71 KLFIGGLSHDTTDEQLGNYFSQWGPVVDAIVIRD 104
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ NTT + + +++ Q+G+I IIV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIV 54
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ NTT + + +++ Q+G+I IIV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIV 54
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 32.7 bits (71), Expect = 0.23
Identities = 13/31 (41%), Positives = 23/31 (74%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ NTT + + +++ Q+G+I IIV
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIV 54
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
F FV F +E SA +A+ K+N + F K + V + KP
Sbjct: 45 FAFVGFLDEGSASNALAKSNQTFFNSKKLTVEECRPFGDANKP 87
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 111 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
L D D S ++++G LS TT E L DYF ++G+++ +V
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMV 76
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKID 239
++++G LS +T+E++ YF YGK++
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVE 161
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 31.9 bits (69), Expect = 0.40
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 111 LTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
L D D S ++++G LS TT E L DYF ++G+++ +V
Sbjct: 30 LNADSDDGSHGSQDPGKMFIGGLSWQTTAENLRDYFGRFGEVNECMV 76
Score = 31.9 bits (69), Expect = 0.40
Identities = 10/27 (37%), Positives = 20/27 (74%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKID 239
++++G LS +T+E++ YF YGK++
Sbjct: 135 KVFIGGLSATSTLEDMKQYFETYGKVE 161
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+ T +I+VG L +T+ + L++YF Q+G I+ +V
Sbjct: 30 RDTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVV 66
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
KS + +++VG L + + ++L +F Q+GK+D I
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
K +I+VG +S E+L +F QYG++
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 31.1 bits (67), Expect = 0.70
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
KS + +++VG L + + ++L +F Q+GK+D I
Sbjct: 105 KSRENKKVFVGGLPSDYSEQDLRSHFEQFGKVDDI 139
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 141 KSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
K +I+VG +S E+L +F QYG++
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEV 55
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 105 DNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
D LT +++ K+ + +YVG +S TT +L D F YG I
Sbjct: 221 DKLTFEQVFNSTKAD-NTSVYVGNISQQTTDADLRDLFSTYGDI 263
>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
protein C06A5.1 protein.
Length = 1932
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +3
Query: 54 LLTISQKYSCNK*ITMADNLTLDRIDMKQKSTAHLRI----YVGALSDNTTVEELYDYFI 221
L++ K + K I MA+N+ LDRID + S +L I +G S T + +
Sbjct: 1190 LVSRMSKETAEKVIKMAENMPLDRIDHQSLSNMYLLIRGYRMIGVQSGETLINRIKS--- 1246
Query: 222 QYGKIDGIIVNE 257
Q +D I E
Sbjct: 1247 QMDNLDAFIAKE 1258
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
F FV+F + A+DA++ +G F G+ I V
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
F FV+F + A+DA++ +G F G+ I V
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRV 78
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
FGFV+F ++ A+DA+ NG G+ +
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
FGFV+F ++ A+DA+ NG G+ +
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
FGFV+F ++ A+DA+ NG G+ +
Sbjct: 38 FGFVEFDDKRDAEDAVHDLNGKELGGERV 66
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FGFVQF E SA ++ + NG +K + V A
Sbjct: 121 FGFVQFNEAGSADESCRSLNGMSWKACCLDVHLA 154
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
FGFV F ++ A DA+ NG G+ +
Sbjct: 37 FGFVDFQDQRDADDAVHDLNGKELCGERV 65
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-SEMLKP*RYIQKCH 412
+GFV + + A+ AI++ NG + I AT K + KP Y +K +
Sbjct: 65 YGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSY 116
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-SEMLKP*RYIQKCH 412
+GFV + + A+ AI++ NG + I AT K + KP Y +K +
Sbjct: 75 YGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSY 126
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-SEMLKP*RYIQKCH 412
+GFV + + A+ AI++ NG + I AT K + KP Y +K +
Sbjct: 178 YGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSY 229
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK-SEMLKP*RYIQKCH 412
+GFV + + A+ AI++ NG + I AT K + KP Y +K +
Sbjct: 146 YGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSY 197
>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
protein 3 protein.
Length = 3343
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/54 (29%), Positives = 33/54 (61%)
Frame = +3
Query: 144 STAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIVNEILDLCNSPKNQVHRMQ 305
+T+ + I+VG ++DNT EL YFI+ + + I ++I+ + + K++ +Q
Sbjct: 1738 ATSKILIHVGDINDNTPEFELSSYFIKISE-NSKIGSKIIRILATDKDKDAELQ 1790
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +1
Query: 373 RDVETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNN 486
RDV+ I P+VP + L+ + + ++E+ Y Y +NN
Sbjct: 432 RDVQLQNIIPQVPLSTLLE--KFDGKTEKEYPTYNDNN 467
>U28739-11|AAR25657.1| 487|Caenorhabditis elegans Hypothetical
protein C17G10.6b protein.
Length = 487
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 427 KDTQMEDESEEAYDNYGNNNDHGFQEELKR 516
K+ + E+E + D+ GNN ++G++++ KR
Sbjct: 378 KNNEDEEEDDNDEDDDGNNEENGYKKKQKR 407
>U28739-10|AAR25656.1| 683|Caenorhabditis elegans Hypothetical
protein C17G10.6a protein.
Length = 683
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +1
Query: 427 KDTQMEDESEEAYDNYGNNNDHGFQEELKR 516
K+ + E+E + D+ GNN ++G++++ KR
Sbjct: 429 KNNEDEEEDDNDEDDDGNNEENGYKKKQKR 458
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 364
FGFV+F E A AIK N GK I V A+
Sbjct: 56 FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 364
FGFV+F E A AIK N GK I V A+
Sbjct: 66 FGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 100
>Z81128-3|CAB03401.1| 410|Caenorhabditis elegans Hypothetical
protein T23D8.3 protein.
Length = 410
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 382 ETVTIYPEVPPAVALKDTQMEDESEEAYDNYGNNNDHGFQEE 507
E T+Y ++ + +DE +E YD+Y N+D F EE
Sbjct: 138 ERTTVYRSTRRGEDSEEEEDDDEDDEMYDDY--NDDELFGEE 177
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV A A + NG+ +G+ + V AT +
Sbjct: 23 FGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 59
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV A A + NG+ +G+ + V AT +
Sbjct: 141 FGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 183 DNTTVEELYDYFIQYGKIDGIIVNEILDLC 272
D + LYD+ +++ K +G V I+DLC
Sbjct: 322 DKLSAGHLYDFRMEFQKEEGSFVPTIVDLC 351
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 183 DNTTVEELYDYFIQYGKIDGIIVNEILDLC 272
D + LYD+ +++ K +G V I+DLC
Sbjct: 322 DKLSAGHLYDFRMEFQKEEGSFVPTIVDLC 351
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
++YVG L + T +EL + F ++G+I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
++YVG L + T +EL + F ++G+I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
++YVG L + T +EL + F ++G+I
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRI 29
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV A A + NG+ +G+ + V AT +
Sbjct: 141 FGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLATQR 177
>AL032647-7|CAA21691.2| 360|Caenorhabditis elegans Hypothetical
protein Y57A10B.4 protein.
Length = 360
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 145 DFCFISILSNVRLSAIVIYLLQLYFC 68
D+ F+ +L NV LSA ++ + L FC
Sbjct: 285 DWIFVHLLDNVILSAALVISIALLFC 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,088
Number of Sequences: 27780
Number of extensions: 270874
Number of successful extensions: 890
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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