Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021306
(649 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 39 0.002
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 39 0.002
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 37 0.013
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 36 0.018
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 36 0.031
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 36 0.031
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 35 0.054
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 35 0.054
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.071
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.094
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.094
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.094
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 34 0.094
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 34 0.094
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 34 0.094
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.12
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 33 0.12
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 33 0.16
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 33 0.16
At5g51300.2 68418.m06360 splicing factor-related contains simila... 33 0.22
At5g51300.1 68418.m06359 splicing factor-related contains simila... 33 0.22
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 33 0.22
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 32 0.29
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 32 0.38
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 31 0.50
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 31 0.50
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 31 0.50
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.50
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 31 0.50
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 31 0.66
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 31 0.66
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 31 0.87
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 31 0.87
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 31 0.87
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.87
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 31 0.87
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 31 0.87
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 31 0.87
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 30 1.2
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 30 1.2
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 30 1.2
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.2
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 30 1.2
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 30 1.2
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 30 1.2
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 30 1.2
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 30 1.2
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 30 1.5
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.0
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 2.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 2.0
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 29 2.0
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 29 2.0
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.0
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 2.0
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 29 2.0
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 29 2.0
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 29 2.7
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 29 2.7
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 29 2.7
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 29 2.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 2.7
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.7
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 29 2.7
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 29 3.5
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 29 3.5
At5g66230.1 68418.m08343 expressed protein 28 4.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 28 4.7
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 28 4.7
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 28 4.7
At3g53970.2 68416.m05962 proteasome inhibitor-related similar to... 28 4.7
At3g53970.1 68416.m05963 proteasome inhibitor-related similar to... 28 4.7
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 28 4.7
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 28 4.7
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 28 6.1
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 28 6.1
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 6.1
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 28 6.1
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 28 6.1
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 27 8.1
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 27 8.1
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 27 8.1
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 27 8.1
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 27 8.1
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 27 8.1
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
FGFV F+ E SA +AIK+ +G G+ I V AT++S
Sbjct: 78 FGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/38 (47%), Positives = 25/38 (65%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
FGFV F+ E SA +AIK+ +G G+ I V AT++S
Sbjct: 78 FGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATERS 115
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 36.7 bits (81), Expect = 0.013
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
+GFVQF E SA++AI+K NG V K I V K E
Sbjct: 176 YGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEE 214
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV F A A++ NG F K V A KSE
Sbjct: 267 FGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSE 305
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+YV LS+ TT +EL F QYG I +V
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVV 256
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+YVG L N T +LYDYF + ++ + V
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRV 77
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
GFV F+ S A + + NG + GK + V A K E
Sbjct: 371 GFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEE 408
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKN 343
GFVQFA+ SA+DAI+ NG+V GKN
Sbjct: 359 GFVQFADRKSAEDAIESLNGTVI-GKN 384
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
+GFV+F +E+ A+ + NG+ + + V AT K
Sbjct: 246 YGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPK 282
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 355
+GFV+F ++A++ ++ +GSV + P R
Sbjct: 151 YGFVEFLSRAAAEEVLQNYSGSVMPNSDQPFR 182
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/36 (47%), Positives = 18/36 (50%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 367
+GFV F E SA AI NG G NI V A D
Sbjct: 74 YGFVNFISEDSANSAISAMNGQELNGFNISVNVAKD 109
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 35.5 bits (78), Expect = 0.031
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG LS NTT EE YF ++G+ ++V
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVV 151
Score = 27.5 bits (58), Expect = 8.1
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
+++VG ++ T+ E L YF +YG + + ++ E
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKE 40
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
+GFVQF +E +A AI+ N ++ K I V K++ +KP
Sbjct: 154 YGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKP 196
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV F+ A DA+K +G +F GK + V A K +
Sbjct: 346 FGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 34.7 bits (76), Expect = 0.054
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
+GFVQF +E SAQ AI K NG + K +
Sbjct: 178 YGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATD 367
FGF+ F E AQ A+K NG + G+ I V A +
Sbjct: 109 FGFITFESEDDAQKALKALNGKIVNGRLIFVETAKE 144
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 49 FGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 49 FGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV F +E + +DAI++ NG G+ I V A +
Sbjct: 49 FGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 33.9 bits (74), Expect = 0.094
Identities = 14/36 (38%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNEIL 263
+++VG L+ +T E +YD+FI+YG I + +I+++ L
Sbjct: 18 KVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKL 53
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV F +E + +DAI+ NG G++I V A +
Sbjct: 51 FGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGFV F +E + +DAI+ NG G++I V A +
Sbjct: 51 FGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP*RYIQK 406
+GFV+FAEES A+ + NG + + + AAT K + +Y+ K
Sbjct: 160 YGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTK 208
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNI 346
+GFVQF +E +AQ AI K NG + K +
Sbjct: 174 YGFVQFEKEETAQAAIDKLNGMLLNDKQV 202
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
GFV+FA + A++A++K NG I + A K+ L P
Sbjct: 170 GFVEFASVNEAEEALQKKNGECLDNNKIFLDVANKKATYLPP 211
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNI 346
GFV+FA + AQ A++K NG + + I
Sbjct: 532 GFVEFASVNEAQKALQKMNGENLRSREI 559
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
T H +++VG L+ T +E+ YF Q+G+I + +I+ +
Sbjct: 14 TTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITD 51
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
+GFV++A+ A A++ NG F+G+ + VR A + P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAP 565
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
+GFV++A+ A A++ NG F+G+ + VR A + P
Sbjct: 523 YGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGKSPPPIAP 565
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKN 343
GFVQFA SA++AI NG+V GKN
Sbjct: 365 GFVQFANRQSAEEAIGNLNGTVI-GKN 390
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
+GFV+F +E+ A+ + NG+ + + V AT K
Sbjct: 257 YGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPK 293
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEM 379
FGFVQFA A++A+ G+ I V A TD++E+
Sbjct: 327 FGFVQFARLEDARNALNLNGQLEIAGRAIKVSAVTDQTEV 366
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEMLKP 388
+GFV F+ SA DAI+ +G G+ + V T + + P
Sbjct: 49 YGFVTFSNRRSADDAIEDMDGKSIGGRAVRVNDVTTRGGRMNP 91
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L + T EE +YF Q+G I ++V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G +S +T E L DYF YG ++ +I+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L + T EE +YF Q+G I ++V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G +S +T E L DYF YG ++ +I+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L + T EE +YF Q+G I ++V
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVVV 141
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
++++G +S +T E L DYF YG ++ +I+ +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRD 40
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 31.5 bits (68), Expect = 0.50
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEM 379
FGFV FA AQ A+ + NG G+ I V A K +
Sbjct: 77 FGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQSL 116
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 31.5 bits (68), Expect = 0.50
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFVQF E SA A +GS+ GK + V +K E
Sbjct: 153 FGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDE 191
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 31.1 bits (67), Expect = 0.66
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 355
+GFV FA A++AI K NG G+ I ++
Sbjct: 238 YGFVSFATREEAENAITKLNGKEIMGRPITLK 269
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.1 bits (67), Expect = 0.66
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRA 358
F FV F +E S + AI + NG G+NI +A
Sbjct: 87 FRFVTFKDEDSMRTAIDRMNGQELDGRNITAQA 119
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ + T E YF Q+G I ++V
Sbjct: 34 KIFVGGLASSVTEAEFKKYFAQFGMITDVVV 64
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ + T E YF Q+G I ++V
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVV 137
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L+ + T E YF Q+G I ++V
Sbjct: 107 KIFVGGLASSVTEAEFKKYFAQFGMITDVVV 137
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
D T +YV L+++TT ++L + F +YGKI +V
Sbjct: 20 DSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 60
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV F A A++ NG F K V A KSE
Sbjct: 71 FGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSE 109
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
T + +++VG L+ T +E+ YF Q+G+I + +I+ +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITD 51
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 30.7 bits (66), Expect = 0.87
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
T + +++VG L+ T +E+ YF Q+G+I + +I+ +
Sbjct: 14 TTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITD 51
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
+GFVQ+ + +AQ AI K NG + K + V
Sbjct: 175 YGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 29.5 bits (63), Expect = 2.0
Identities = 16/39 (41%), Positives = 17/39 (43%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
FGFV F A A+ NG F K V A KSE
Sbjct: 266 FGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSE 304
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 150 AHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
A +Y+G +S TT E+LY+ F + G+I II+
Sbjct: 32 ASTTVYIGNVSFYTTEEQLYELFSRAGEIKKIIM 65
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGS 325
FGFV F +E + +DAI++ NGS
Sbjct: 49 FGFVTFKDEKAMRDAIEEMNGS 70
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
+I+VG L+ TT ++L YF Q+G+ +D +V+E
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSE 46
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEM 379
F FV+FA + AI+ NGS G+ I V+ A + +
Sbjct: 63 FAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAHRPSL 102
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
F FV+F + A +AIKK NG +F + I V A K+
Sbjct: 374 FAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKN 411
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPV-RAATDKSEM 379
N+GF+++ E A AIK N GK I V +A+ DK +
Sbjct: 67 NYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSL 108
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIVNEILD-LCNSPK 284
++YV LS TT + L D F Q+G + I +N ++D + N PK
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNL--IHMNMVMDKVANRPK 118
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGF+ F + A DAIK +G K I V A K
Sbjct: 55 FGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
D + RI+VG LS + T +L F +YGKI
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGF+ F + A DAIK +G K I V A K
Sbjct: 55 FGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPK 91
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
D + RI+VG LS + T +L F +YGKI
Sbjct: 3 DRENDGNLESRIFVGGLSWDVTERQLESTFDRYGKI 38
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNI 346
GFVQF+E+S A++A++ NG G +
Sbjct: 299 GFVQFSEKSCAEEALRMLNGVQLGGTTV 326
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI-DGIIV 251
+I+VG LS +T VE L + F +GKI D ++V
Sbjct: 37 KIFVGGLSPSTDVELLKEAFGSFGKIVDAVVV 68
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNI 346
GFVQ+A ++SA+ A+ NG+ G++I
Sbjct: 298 GFVQYANKASAEHALSVLNGTQLGGQSI 325
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSEM-LKP*RY 397
+GFV+FA+E+ A+ + NG + + + A +K+ + ++P Y
Sbjct: 198 YGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMY 244
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
T +++VG+L+ T +E+ + F+Q+G ++ +
Sbjct: 208 TLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +3
Query: 99 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G +
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNV 146
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI 245
T +++VG+L+ T +E+ + F+Q+G ++ +
Sbjct: 208 TLEFKLFVGSLNKQATEKEVEEIFLQFGHVEDV 240
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/46 (26%), Positives = 28/46 (60%)
Frame = +3
Query: 99 MADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
++D+ + D+ +S+ ++++VG++ T EE+ YF Q+G +
Sbjct: 102 ISDHGSFTGTDVSDRSST-VKLFVGSVPRTATEEEIRPYFEQHGNV 146
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
+FGFV +AE SSA A+K G+ + V A ++E
Sbjct: 332 DFGFVHYAERSSALKAVKDTERYEVNGQPLEVVLAKPQAE 371
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 364
FGFV F + AQ AI + NG + I AT
Sbjct: 187 FGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWAT 221
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
+I+VG + T +EL D+F +YG +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNV 135
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
+I+VG + T +EL D+F +YG +
Sbjct: 110 KIFVGGIPSTVTEDELKDFFAKYGNV 135
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSV 328
GFVQF +A++A++K NG+V
Sbjct: 344 GFVQFVNRPNAEEALEKLNGTV 365
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSV 328
GFVQF +A++A++K NG+V
Sbjct: 342 GFVQFVNRPNAEEALEKLNGTV 363
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKS 373
FGFVQ + E+ AI +G +G+ I V A +++
Sbjct: 250 FGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERT 287
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVR 355
+G+V F + AQ A++ NG F G+ I V+
Sbjct: 120 YGYVWFNSKEDAQSAVEAMNGKFFDGRFILVK 151
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/45 (28%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Frame = +3
Query: 129 DMKQKSTAHL-RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
+ K +S + L ++++G +S +T E L +YF +YG ++ +I+ +
Sbjct: 5 EQKMESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRD 49
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+I+VG L + T E +YF Q+G I ++V
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVVV 153
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
R+YVG LS TT + L + F YG +D I++ +
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRD 37
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.1 bits (62), Expect = 2.7
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
++VG+L+ TT +L + F +YG ID I V
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDIDRITV 49
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 364
FGFV F + AQ AI + NG + I AT
Sbjct: 195 FGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 229
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAAT 364
FGFV F + AQ AI + NG + I AT
Sbjct: 191 FGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWAT 225
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKIDGIIV 251
+YVG L+ ++++D+F YG+++ I V
Sbjct: 227 LYVGGLNSRIFEQDIHDHFYAYGEMESIRV 256
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 28.7 bits (61), Expect = 3.5
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = +3
Query: 129 DMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGI-IVNEILDLCNSPKNQVHRMQ 305
D K + ++VG LS +TT + L + +YG+I + +V I+ + V
Sbjct: 55 DSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYET 114
Query: 306 *KKLMVAYSKEKISL 350
K+++ AY SL
Sbjct: 115 EKEMLRAYEDAHHSL 129
>At5g66230.1 68418.m08343 expressed protein
Length = 329
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 427 KDTQMEDESEEAYDNYGNNNDHGFQEELKRATTG 528
KD + +DE EEAY +YG D + +E + G
Sbjct: 232 KDEEYDDEEEEAY-SYGEEYDEEYYDEEEEEEEG 264
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI-DGIIVNE 257
+I+VG L+ TT E +F +YG+I D +I+ +
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSVIMKD 76
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 162 IYVGALSDNTTVEELYDYFIQYGKI 236
+YV L N T EE+YD F +YG I
Sbjct: 21 LYVRNLPFNITSEEMYDIFGKYGAI 45
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
+I+VG L +V++L DYF ++G I
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHI 266
>At3g53970.2 68416.m05962 proteasome inhibitor-related similar to
proteasome inhibitor PI31 subunit (hPI31) SP:Q92530 from
[Homo sapiens]
Length = 252
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 87 K*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV---NE 257
K + M D L +D I AHL I VG ++ + DY Q+ +D ++ +E
Sbjct: 90 KCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEG---DYSAQFKNLDKLVTDLQSE 146
Query: 258 ILD-LCNSPKNQVHRMQ 305
I+D L PK R Q
Sbjct: 147 IIDKLDGKPKPVASRAQ 163
>At3g53970.1 68416.m05963 proteasome inhibitor-related similar to
proteasome inhibitor PI31 subunit (hPI31) SP:Q92530 from
[Homo sapiens]
Length = 302
Score = 28.3 bits (60), Expect = 4.7
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = +3
Query: 87 K*ITMADNLTLDRIDMKQKSTAHLRIYVGALSDNTTVEELYDYFIQYGKIDGIIV---NE 257
K + M D L +D I AHL I VG ++ + DY Q+ +D ++ +E
Sbjct: 90 KCLAMDDKLLVDAIADGGAEPAHLEIKVGDYAEESNEG---DYSAQFKNLDKLVTDLQSE 146
Query: 258 ILD-LCNSPKNQVHRMQ 305
I+D L PK R Q
Sbjct: 147 IIDKLDGKPKPVASRAQ 163
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FGFV + Q+AIK +G+ G+ I V A
Sbjct: 247 FGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDKSE 376
F F+ F +DA NG+ ++G+ I VR +KSE
Sbjct: 255 FAFLSFTS-GEERDAALSFNGTQYEGRRIIVREGIEKSE 292
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
R+YVG LS T +L F +YG++
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV 37
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
GFV+FA A++A++K G + I ++AA
Sbjct: 226 GFVEFASAKEAENALEKKKGEYLQDGEIFLKAA 258
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +2
Query: 257 NFGFVQFAEESSAQDAIK 310
++GFV+F EE++AQ AIK
Sbjct: 1116 SYGFVEFKEENAAQRAIK 1133
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGKI 236
R+YVG LS T +L F +YG++
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV 37
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/34 (32%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 159 RIYVGALSDNTTVEELYDYFIQYGK-IDGIIVNE 257
+++VG +S TT E +YF ++G+ +D +I+ +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTD 100
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAATDK 370
FGF+ FA+ + ++I++ +G F + I V A K
Sbjct: 50 FGFITFADRRAMDESIREMHGRDFGDRVISVNRAEPK 86
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 263 GFVQFAEESSAQDAIKKANGSVFKGKNI 346
GFVQ+A + A+ A+ NG+ G++I
Sbjct: 316 GFVQYANRACAEQALSVLNGTQLGGQSI 343
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FGFV + Q AI NG+ G+ I V A
Sbjct: 292 FGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPVRAA 361
FGFV + Q AI NG+ G+ I V A
Sbjct: 300 FGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 147 TAHLRIYVGALSDNTTVEELYDYFIQYGKI 236
T +++VG L+ T E L +F QYG+I
Sbjct: 21 TTFTKVFVGGLAWETQSETLRQHFEQYGEI 50
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +2
Query: 260 FGFVQFAEESSAQDAIKKANGSVFKGKNIPV 352
FGFVQF + + A DA +G + G+ + V
Sbjct: 79 FGFVQFMDPADAADAKHHMDGYLLLGRELTV 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,756,173
Number of Sequences: 28952
Number of extensions: 242780
Number of successful extensions: 907
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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