Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021305
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1 |Schizosaccha...    41   1e-04
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    26   4.3  
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb...    25   5.7  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   5.7  
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha...    25   5.7  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.5  
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    25   7.5  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.5  
SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr 2...    25   7.5  

>SPAC6F12.06 |||Rho GDP dissociation inhibitor Rdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVGRH--DVELDLT 428
           E +  D EDESL+K+K +L      G      +D R V++ K   +  GR   DV ++  
Sbjct: 37  EYMKMDAEDESLQKWKASL---GITGTGYSPSNDRRTVVILKLSLLVDGRDPVDVNMEDA 93

Query: 429 GDLTDLQKQGFVIKEG 476
             +  ++K+GF IKEG
Sbjct: 94  ASVEQIRKKGFTIKEG 109


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 161 LENLK*PIHPKRIQRKKKSNPHISHLQ 241
           L + + PI PK     +K NP+ISHL+
Sbjct: 493 LRHTEPPIIPKLAPIDEKGNPNISHLK 519


>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 288 LRKYKEALLGQAQAGAVIVE---PDDPRKVIVKKQHCVWVGRHDVELD 422
           L K   ALL +++  + + E   P D  K +++++H  WV  ++  LD
Sbjct: 235 LPKLTYALLSESKIRSKLSEMGLPTDGHKQLLQRRHAKWVTLYNSNLD 282


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 241 EKTIERSLLLTKRMSPFGSTRKHCLDKPKQALSL 342
           +K IE + +L KR+S + S  +  L  P Q  SL
Sbjct: 500 KKLIEENKILQKRLSEYTSVIQASLTAPSQPASL 533


>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 407 MAPNPHTMLLLDYHFARIIRFNNDSACLGLSKQCFLVLPKG--LILLVSSKDLSMVFS 240
           ++  PH ++      A +IR N +    GL +  FLV+ +   L+    + DL   FS
Sbjct: 122 LSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTFADDLDDCFS 179


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 439 PTSKSRDS**RRVYIPNKGSFTFTRDRHGLKYAKPQT 549
           PTS S     R+ +IP +G++TF+        A P+T
Sbjct: 233 PTSDSDVDLIRQYFIPKEGTYTFSNMHIRYVSANPKT 269


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = -3

Query: 355 SSGSTMTAPAWACPSSASLYF-RRDSSSWSAARISLWSSL-EVAYMRI 218
           ++ S++  P+   P+SASLY    D S   A    L++S+  VA +R+
Sbjct: 64  TNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRV 111


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 270 DQEDESLRKYKEALLGQAQAGAVIV 344
           D+  E+++ YK ALLG     +++V
Sbjct: 454 DRPQEAIKSYKRALLGSQTNSSILV 478


>SPBC27B12.09c |||FAD transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 512 RVNVNXPLFGMYTLLYHESL 453
           RVN   P FG Y L+ +E L
Sbjct: 130 RVNYTNPFFGFYDLIKNEGL 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,343
Number of Sequences: 5004
Number of extensions: 40435
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)