Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021305
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0132 - 12166009-12166089,12166197-12166321,12166489-121667...    42   3e-04
02_05_0539 + 29846439-29846711,29846819-29846885,29847832-298480...    35   0.050
01_06_1776 - 39815634-39815714,39815761-39815927,39816278-398164...    33   0.20 
11_02_0026 - 7495102-7495656                                           29   1.9  
06_01_0592 - 4277789-4278955                                           29   2.5  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     28   5.8  
11_01_0612 + 4902197-4902929,4903443-4904071                           27   7.6  
09_04_0180 + 15367737-15367755,15368874-15369739                       27   7.6  

>06_02_0132 -
           12166009-12166089,12166197-12166321,12166489-12166710,
           12168194-12168260,12168424-12168741
          Length = 270

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKQHCVWVGRHDVELDL 425
           +E L  D+EDESLR++KE LLG     +V   +EPD    V +     +  GR DV L L
Sbjct: 99  KEQLEMDKEDESLRRWKEQLLGSVDLNSVGESLEPD----VRITSLCILSPGRPDVLLPL 154

Query: 426 TGDLTDLQKQGFVIKEG 476
             + ++ ++  F +KEG
Sbjct: 155 PVEPSNSKEPWFTLKEG 171


>02_05_0539 +
           29846439-29846711,29846819-29846885,29847832-29848050,
           29848200-29848324,29848423-29848503
          Length = 254

 Score = 34.7 bits (76), Expect = 0.050
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGAV--IVEPDDPRKVIVKKQHCVWVGRHDVELDL 425
           ++ L  D++DESLR++KE LLG     +V   +EPD    V +     +  GR D+ L L
Sbjct: 84  KDQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPD----VKIMSLAILSPGRPDIFLPL 139

Query: 426 TGDLTDLQKQGFVIKEG 476
             +  + +   F +KEG
Sbjct: 140 PVE-PNAKGVWFTLKEG 155


>01_06_1776 -
           39815634-39815714,39815761-39815927,39816278-39816496,
           39816614-39816680,39816771-39816932
          Length = 231

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQ 320
           +E L  D++DESLR++KE LLGQ
Sbjct: 47  KEQLELDKDDESLRRWKEQLLGQ 69


>11_02_0026 - 7495102-7495656
          Length = 184

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/49 (36%), Positives = 26/49 (53%)
 Frame = +3

Query: 294 KYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVGRHDVELDLTGDLT 440
           +Y+  + G  +AG++     D    +  K   VWVG HDVE D  GD+T
Sbjct: 120 RYRSNIYGNVRAGSI-----DGLDGVSVKIAIVWVGIHDVEAD-GGDVT 162


>06_01_0592 - 4277789-4278955
          Length = 388

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 264 AADQEDESLRKYKE-ALLGQAQAGAV---IVEPDDPRKVIVKKQHCVWVGR 404
           AA +   SLR++   A  G  +AG V   +VEP+ P +    +Q   WV R
Sbjct: 9   AARRFSRSLRRFSSYAASGGEEAGGVPAGVVEPESPVRAPPDEQFAAWVAR 59


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -1

Query: 477 HPPLSRIPAFGGRSSPQ*DPVRHHGAQPTH 388
           HPP S+ P    R +P   P RHHGA   H
Sbjct: 48  HPP-SQAPGPAARHAP--GPARHHGAPAPH 74


>11_01_0612 + 4902197-4902929,4903443-4904071
          Length = 453

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 522 VTISRERKRXFIRYVHPPLSRIPAFGGRSSP 430
           V +  E+    +  VHP L+R+PA GG  SP
Sbjct: 171 VRLGDEQLVRHLMSVHPRLARVPAPGGGMSP 201


>09_04_0180 + 15367737-15367755,15368874-15369739
          Length = 294

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 235 PPEKTIERSLLLTKRMSPFGSTRKHCLDKPKQALSLLNRMIL 360
           PP + I RS L  KR+SP G++      K  +A+  +  ++L
Sbjct: 192 PPPRLIPRSFL-AKRLSPTGASDAATATKTTKAMDFVQTIVL 232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,084,292
Number of Sequences: 37544
Number of extensions: 271948
Number of successful extensions: 782
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)