Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021305
         (555 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)               32   0.36 
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 28   4.5  
SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)                 28   4.5  
SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7)                      28   5.9  
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)                  27   7.8  

>SB_42593| Best HMM Match : Rho_GDI (HMM E-Value=3.7e-17)
          Length = 339

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVG------RHDVE 416
           EI   D +DE+L KYK+ LLG          P  P+ V+V+K   V         R  +E
Sbjct: 32  EIQNLDADDEALVKYKQTLLGVTPEEL----PKGPKNVVVEKVAIVPTDEKGNPVRDPIE 87

Query: 417 LDLTGDLTDL 446
           LDL G   D+
Sbjct: 88  LDLIGGNDDV 97


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 252 REILAADQEDESLRKYKEALLGQAQAGA-VIVEPDD 356
           R++  +D ED++   YKE   G+  +GA    EPDD
Sbjct: 782 RQLAMSDSEDDASSSYKEKPAGRRSSGASQNSEPDD 817


>SB_6761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = +2

Query: 17  RHFFGLKNLETANRCKFYNYLVFKCFFLFRLLVLCKKSFVTCYKKRICLENLK*PIHPKR 196
           + FF  K + T N     N    + FFL     LC +  +  +   ICL ++   I P R
Sbjct: 52  QEFFIDKKMATQNEYASQNKRTERTFFLITKAALCLEYILGRFVVLICLSSVVSAIQPFR 111

Query: 197 IQRK 208
           + ++
Sbjct: 112 LHKE 115


>SB_32173| Best HMM Match : 7tm_1 (HMM E-Value=7.3e-34)
          Length = 375

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = -3

Query: 391 TQCCFLTITLRGSSGSTMTAPAWACPSSASLYFRRDSSSWSAARISLWSSLEVAYMRI*F 212
           T C F+   +  ++   +   A A PS+ S  FR   S  ++ R  +  S+ +A + + F
Sbjct: 186 TTCFFIPFVIIVTAYVCIYIAARARPSTESFRFRHRMSQRNSFRKEVRLSVTIAVITVLF 245

Query: 211 LLPLYPLRVYGLLQVLQTY 155
           ++   PL V   L ++ TY
Sbjct: 246 VIAWMPLFV---LSIIATY 261


>SB_38350| Best HMM Match : OCIA (HMM E-Value=6.7)
          Length = 537

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
 Frame = -2

Query: 401 PNPHTMLLLDYHFARIIRFNN--DSACLGLSKQCFLVLPKGLI----LLVSSKDLSMV 246
           PN +   LL Y+   +  +     S+C  +   CFLVLP+  I      +++KD+ +V
Sbjct: 360 PNSYLTGLLSYYSLLLDSYPTCQTSSCFIMDSSCFLVLPESFIPPLTRTINAKDVELV 417


>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
          Length = 765

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 410 CRTGSHWGLDRPPKAGIRDKGGCTYRIKXRLRSR 511
           CR        R PK+ +R +    YRI+ R RSR
Sbjct: 315 CRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRSR 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,827
Number of Sequences: 59808
Number of extensions: 322242
Number of successful extensions: 837
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)