Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021305
         (555 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.7  
AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.         23   5.1  
AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.         23   5.1  
AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.         23   5.1  
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    23   6.7  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   6.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   6.7  
AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical prote...    23   6.7  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   8.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    23   8.9  

>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 410  CRTGSHWGLDRPPKAG 457
            C TGS    +RPPKAG
Sbjct: 1626 CSTGSSNSCNRPPKAG 1641


>AF020851-1|AAC31864.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 348 PDDPRKVIVKKQHCVWVGRHDVELDLTGDLTDLQKQGFVIKEGVHTE*RXVYVHARSS 521
           P + R     K    W    DV     G+LTD +K+   ++ G  +E R      RSS
Sbjct: 133 PSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKEIQQLRGGTRSEGRRTPRLKRSS 190


>AF020850-1|AAC31863.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 348 PDDPRKVIVKKQHCVWVGRHDVELDLTGDLTDLQKQGFVIKEGVHTE*RXVYVHARSS 521
           P + R     K    W    DV     G+LTD +K+   ++ G  +E R      RSS
Sbjct: 133 PSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKEIQQLRGGTRSEGRRTPRLKRSS 190


>AF020849-1|AAC31862.1|  214|Anopheles gambiae unknown protein.
          Length = 214

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 348 PDDPRKVIVKKQHCVWVGRHDVELDLTGDLTDLQKQGFVIKEGVHTE*RXVYVHARSS 521
           P + R     K    W    DV     G+LTD +K+   ++ G  +E R      RSS
Sbjct: 133 PSNQRSSSSSKPTPCWESNKDVFPKPCGNLTDSEKEIQQLRGGTRSEGRRTPRLKRSS 190


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 261 LAADQEDESLRKYKE-ALLGQAQ 326
           L+ D+E ESLR+ KE   LGQ +
Sbjct: 56  LSLDEEKESLRREKERQALGQLE 78


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 476 TLLYHESLLLEVGQVPSEIQFDIMAPNPHTMLLLDY 369
           TL Y +S +L   Q   ++    +    HT L  DY
Sbjct: 638 TLSYQQSAVLHYVQQEDKVHLKRITQQSHTALEFDY 673


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 476 TLLYHESLLLEVGQVPSEIQFDIMAPNPHTMLLLDY 369
           TL Y +S +L   Q   ++    +    HT L  DY
Sbjct: 639 TLSYQQSAVLHYVQQEDKVHLKRITQQSHTALEFDY 674


>AJ439060-3|CAD27754.1| 1645|Anopheles gambiae hypothetical protein
            protein.
          Length = 1645

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 217  KSSYKPPPEKTIERSLLLTKRMSPFGS 297
            K + +PPP +   R L   +  SP+G+
Sbjct: 1126 KPAQQPPPLRRDARELASMRSFSPYGA 1152


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 331  PAWACPSSASLYFRRDSSSWS 269
            P   CP +   +  RD+ SWS
Sbjct: 1037 PDPVCPDTLQRHLLRDADSWS 1057


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 20  HFFGLKNLETANRCKFY 70
           H F +KNLE AN+  F+
Sbjct: 624 HSFIVKNLEIANKITFH 640


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,427
Number of Sequences: 2352
Number of extensions: 9148
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 51722361
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)