Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021305
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein...    46   2e-05
U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP dissoci...    46   2e-05
Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.1  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.1  

>U40426-5|AAF99947.1|  191|Caenorhabditis elegans Rho gdi protein 1
           protein.
          Length = 191

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVGRHDVELDLT 428
           E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+    +  G+     DL+
Sbjct: 26  ELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSFDLS 80


>U36431-1|AAD10299.1|  191|Caenorhabditis elegans Rho GDP
           dissociation inhibitor protein.
          Length = 191

 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 26/58 (44%), Positives = 36/58 (62%)
 Frame = +3

Query: 255 EILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVGRHDVELDLT 428
           E+L AD+EDESL+ YK  LLGQ   G VIV+  +P +VIV+    +  G+     DL+
Sbjct: 26  ELLNADKEDESLKVYKAKLLGQ---GTVIVDEKNPLRVIVRSVELLINGKTAQSFDLS 80


>Z35597-3|CAA84646.2|  498|Caenorhabditis elegans Hypothetical
           protein C36E8.3 protein.
          Length = 498

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 546 LRLCVLQTVTISRERKRXFIRYVHP 472
           LR+C  Q + ISRER    IRY  P
Sbjct: 18  LRICEAQNIDISRERIPDQIRYAEP 42


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 362  ARIIRFNNDSA----CLGLSKQCFLVLPKGLILLVSSKDLSMVFSGGGLYEDL 216
            +RI RF N++     C G   +C     KGLI  V++K L+ V +GG + ++L
Sbjct: 2103 SRIDRFYNNAKVIGHCGGFCGKCSPERYKGLIFEVNTKLLNHVKNGGHIDDEL 2155


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = -2

Query: 362  ARIIRFNNDSA----CLGLSKQCFLVLPKGLILLVSSKDLSMVFSGGGLYEDL 216
            +RI RF N++     C G   +C     KGLI  V++K L+ V +GG + ++L
Sbjct: 2103 SRIDRFYNNAKVIGHCGGFCGKCSPERYKGLIFEVNTKLLNHVKNGGHIDDEL 2155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,005
Number of Sequences: 27780
Number of extensions: 228933
Number of successful extensions: 679
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)