Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021305
(555 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p... 37 0.008
At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family p... 34 0.055
At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family p... 33 0.097
At1g23790.1 68414.m03001 expressed protein 28 3.6
At4g26560.1 68417.m03828 calcineurin B-like protein, putative si... 28 4.8
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 27 8.4
At2g03470.2 68415.m00306 myb family transcription factor / ELM2 ... 27 8.4
At2g03470.1 68415.m00305 myb family transcription factor / ELM2 ... 27 8.4
At1g49470.1 68414.m05544 expressed protein contains Pfam profile... 27 8.4
At1g25570.1 68414.m03174 leucine-rich repeat protein-related co... 27 8.4
>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 240
Score = 37.1 bits (82), Expect = 0.008
Identities = 28/75 (37%), Positives = 40/75 (53%)
Frame = +3
Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVIVKKQHCVWVGRHDVELDLTG 431
+E L D++DESLRK+KE LLG I E DP +V + + GR D+ L L
Sbjct: 71 KEHLEKDKDDESLRKWKEQLLGSVDV-TNIGETLDP-EVRIDSLAIISPGRPDIVL-LVP 127
Query: 432 DLTDLQKQGFVIKEG 476
+ + + F +KEG
Sbjct: 128 ENGNPKGMWFTLKEG 142
>At1g12070.1 68414.m01393 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 34.3 bits (75), Expect = 0.055
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVI 371
+E L D++DESLR++KE LLG V PD K++
Sbjct: 54 KEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKIL 93
>At1g62450.1 68414.m07046 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 223
Score = 33.5 bits (73), Expect = 0.097
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 252 REILAADQEDESLRKYKEALLGQAQAGAVIVEPDDPRKVI 371
+E L D++DESLR++KE LLG V PD K++
Sbjct: 54 KEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKIL 93
>At1g23790.1 68414.m03001 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 3.6
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +1
Query: 217 KSSYKPPPEKTIER----SLLLTKRMSPFGSTRKHCLDKPKQALSLLNRM 354
K + PPP R SLL +R +P +++ L+KP+++LSL R+
Sbjct: 246 KKNDSPPPSVRTRRATAASLLEDEREAPKSTSKYSKLEKPEKSLSLPGRL 295
>At4g26560.1 68417.m03828 calcineurin B-like protein, putative
similar to calcineurin B-like protein 3 [Arabidopsis
thaliana] GI:3309086, calcineurin B-like protein 2
[Arabidopsis thaliana] GI:3309084; contains
INTERPRO:IPR002048 calcium-binding EF-hand domain
Length = 214
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 408 DVELDLTGDLTDLQKQGFVIKEGV 479
D ++DL+ L DL++QGF+ ++GV
Sbjct: 109 DDKIDLSFQLYDLKQQGFIERQGV 132
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1568
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 198 YRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLG 317
YRGRRN TS ED+ + + +D ES A+ G
Sbjct: 1195 YRGRRNMTSCLKTSLEDNNDWVLSDVTKESQSSPGVAIFG 1234
>At2g03470.2 68415.m00306 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 449
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 150 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLGQAQA 329
+++ W+ YT + R Q+L+ + + D E + + D+S + KE L G+
Sbjct: 99 SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 158
Query: 330 GAVIVEPD 353
VI D
Sbjct: 159 KCVIPMSD 166
>At2g03470.1 68415.m00305 myb family transcription factor / ELM2
domain-containing protein contains Pfam profile: PF00249
Myb-like DNA-binding domain; contains Pfam profile:
PF01448 ELM2 domain
Length = 450
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 150 NEYVWRT*SSPYTRRGYRGRRNQILI*ATSREDHREILAADQEDESLRKYKEALLGQAQA 329
+++ W+ YT + R Q+L+ + + D E + + D+S + KE L G+
Sbjct: 100 SDFTWKPVEDVYTCLMNQPPRKQVLVGSNHQADIPEFVKEEILDQSEARTKEDLEGKLMR 159
Query: 330 GAVIVEPD 353
VI D
Sbjct: 160 KCVIPMSD 167
>At1g49470.1 68414.m05544 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 302
Score = 27.1 bits (57), Expect = 8.4
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 20 HFFGLK--NLETANRCKFYNYLVFKCFFLFRLLVLCKKSF 133
+F LK NLE A+ F + ++F CF LF L LC F
Sbjct: 75 NFSSLKPDNLEHASM--FLHLIIFACFALFCELTLCSDLF 112
>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains some similarity to light
repressible receptor protein kinase [Arabidopsis
thaliana] gi|1321686|emb|CAA66376
Length = 628
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 387 CVWVGRHDVELDLTGDLTDL 446
C+W GRHD + DLT L
Sbjct: 575 CIWRGRHDYDFAPPHDLTSL 594
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,334,410
Number of Sequences: 28952
Number of extensions: 216704
Number of successful extensions: 543
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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