Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021303
         (669 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   1.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.3  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    23   2.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    23   2.3  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.0  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   9.1  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 593 ASNSARGESARSPMPGDAPVIPGQP 667
           AS +   E A SP PGD P  P  P
Sbjct: 43  ASPAPPEEEAASPTPGDVPT-PSSP 66



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +2

Query: 503 NKAARLRHCGREHRQRMTTPSN*IQRRLLPASNSARGESARSPMPGDAPV 652
           N AA      + HR  MT+PS   +  + P  +S+   S     P DAP+
Sbjct: 150 NAAAVAAAAQQSHRLMMTSPSGFNRASVSPLISSS--SSPPGVFPVDAPM 197


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 406 PARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQT 519
           P  QP      T+ H I++P+ V  +  +     S  T
Sbjct: 741 PHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDT 778


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 406 PARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQT 519
           P  QP      T+ H I++P+ V  +  +     S  T
Sbjct: 633 PHHQPPRNPVGTNPHDINNPLSVNQLTGQCVRNDSSDT 670


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 395 QQHIAAQMSSAPATMHATPTYR 330
           +QH+   +SS P      PTY+
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYK 198


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 395 QQHIAAQMSSAPATMHATPTYR 330
           +QH+   +SS P      PTY+
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYK 198


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 395 QQHIAAQMSSAPATMHATPTYR 330
           +QH+   +SS P      PTY+
Sbjct: 177 RQHVMHNLSSVPQPQPVLPTYK 198


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 254 CMAFVIVCLRLMTCLFFYSLTRIIYT 177
           C+ + +V L  + C++++    II+T
Sbjct: 132 CIYYFVVPLFFLLCIYYFYCAFIIFT 157


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 472 VISMPDEETMQQSRQTTTLWAGAPP 546
           ++S  D +T+ +   T + W G PP
Sbjct: 18  LLSCKDFDTLYRDCTTASSWPGRPP 42


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 484 PDEETMQQSRQTTTLWAGAPPTYDDAIKLN-PAATVAGVEQRARRVGP 624
           P+ + +QQ  +   L  G        + L+ P  +  G EQ++RR GP
Sbjct: 375 PNAQLLQQLIRERQLAVGGSQEESRVLDLSKPGCSYTG-EQKSRRKGP 421


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 580 ATVAGVEQRARRVGPQSDARRR 645
           +T  G++   ++ GPQSD+R +
Sbjct: 14  STGRGLKYSGQQHGPQSDSRNQ 35


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,499
Number of Sequences: 336
Number of extensions: 3866
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)