Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021303
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 1.8
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 27 1.8
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 27 3.2
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 4.3
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 26 4.3
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 5.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 26 5.6
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa... 25 7.5
SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 7.5
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 25 7.5
SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 9.9
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 9.9
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -1
Query: 252 YGLCDCLPSSNDMPVFLLLDKNNLHRSD 169
YG+CD +P+S++M F ++ KN+L+ D
Sbjct: 347 YGICDWIPNSSNM--FSMIVKNSLYIVD 372
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = -1
Query: 237 CLPSSNDMPVFLLLDKNNLHRS-DFKYHGTRKKNTQNLSKLITKLQLGSSTTLR 79
CLP ++ V K + + D Y G RKK+ Q+ K+++ + +TLR
Sbjct: 25 CLPDCSENAVAQTRSKTLDNAALDLPYVGNRKKSEQDFFKMLSSRDRDAHSTLR 78
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 290 STGWVWLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGL 436
S W+ + RN D+ WR ++ R CN LLGS K+ L
Sbjct: 53 SLRWIAIIQLRNSIDI-IWRKNTKMSLLPEERDFIRCNALLGSIKSENL 100
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = -1
Query: 594 AGNSRRWIQFDGVVIRWRCSRPQCRSLAALLHRLLVWH*YY 472
AG RWI+ G IR+R C +L R L+ + YY
Sbjct: 248 AGGKARWIEIFGKDIRYR----TCLGFLVMLFRELIGNNYY 284
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = -2
Query: 437 EARSFCGCLAGDCSQQHIAAQMSSAPATMHATPTYRTGSA*SSARPSQLISAPAHNNTMP 258
E +SF + S IA +SSAP PTY ++ S R S + HN++
Sbjct: 540 ETKSFSTKASTPLSTDDIATPLSSAPNPPSVMPTYARKTSSHSERSSH---SSYHNSSHV 596
Query: 257 YCMAFVIVCLRLMT 216
AF +R T
Sbjct: 597 PTAAFNSPIMRTST 610
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 275 HNNTMPYCMAFVIVCLRLMTCLFFYSLTRIIY 180
+NN +P+ FV C L YS TR+ Y
Sbjct: 703 NNNILPFGHPFVKECRSLYNLACIYSKTRLTY 734
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 177 RSDFKYHGTRKKNTQNLSKLITKLQL 100
R F++HG KKN +N + I K+ L
Sbjct: 994 RQTFQWHGVLKKNLRNTIRNIVKVFL 1019
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 5.6
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = +3
Query: 423 KRTGFD*YTSDRRSHSRNINARRGDDATKPPDYDTVGGSTANV*RRHQTESSGDCCRRRT 602
K + D TS +HSR+ PP + S A V ++HQ E SG+ + T
Sbjct: 42 KDSNHDRRTSTDTTHSRHRYPETPPSLPPPPSPGILATSPA-VLQKHQQEDSGNSSQSPT 100
Query: 603 A-RAESRPAVRCQET 644
+ ++PA+ T
Sbjct: 101 SPHPSNQPAMLSPST 115
>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
Nse6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 236 VCLRLMTCLFFYSLTRIIYTGPISNITAPEKKTLKTYPS*SRNFNSVARLLFE 78
+ L + + FF SL + I+N+ +K +Y S S N N + R +FE
Sbjct: 185 IALSICSLQFFRSLGDTTCSEWIANL----EKIFYSYKSSSNNLNQIVRFIFE 233
>SPBP4H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 186 NLHRSDFKYHGTRKKNTQNLSKLITKLQLGSSTTLR 79
NL R+ K+ +R+KN QNLS + L+ S L+
Sbjct: 193 NLDRALSKFTQSREKNEQNLSSKASVLRNKKSILLK 228
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 192 KNNLH-RSDFKYHGTRKKNTQNLSKLITKLQLGSSTTLRTVTSGN 61
KN L R + + T KK+ +NL LIT Q S TVT GN
Sbjct: 279 KNKLDGRFEVRIRNTGKKSVENLKILITIPQALKSV---TVTEGN 320
>SPBC8D2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 122
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 509 AARLRHCGREHRQRMTTPSN*IQRRLLPASNSARGESARSPMPGD 643
A R R H R T + +QR+L P+ ++ + P+ D
Sbjct: 71 AGSFRQRKRAHMPRTNTTAQVVQRQLAPSISTVFSRDSNDPLVDD 115
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -1
Query: 228 SSNDMPVFLLLDKNNLHRSDFKYHGTRKKNTQNLSKLITKLQLGSST 88
S D+P +L N+ ++ + H + + ++ K + LQLG S+
Sbjct: 74 SLEDVPRLILTRSNSQEQTPLRTHTPVEYMSDSIHKSLADLQLGGSS 120
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +2
Query: 245 RPYSMAWCCYV 277
R YS+AWCC +
Sbjct: 437 RQYSLAWCCLI 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,968
Number of Sequences: 5004
Number of extensions: 61537
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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