Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021303
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1161 + 24805777-24806356,24806447-24806922 30 1.5
06_03_0608 + 22705321-22705652,22705809-22706178,22706264-227066... 30 1.5
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631 30 1.9
08_02_0869 - 22031889-22032017,22032114-22032204,22032289-220323... 30 1.9
12_01_0899 - 8689125-8689383,8689540-8689826 29 3.3
05_07_0352 - 29475855-29476330,29476421-29477165,29477689-294780... 29 3.3
05_01_0373 + 2922604-2922921 29 3.3
04_01_0179 + 2021977-2024890,2025117-2025610 29 3.3
01_06_0993 + 33647301-33647618 29 3.3
09_04_0222 + 15825878-15826451,15826542-15827017 29 4.4
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 29 4.4
12_01_0317 + 2417147-2417587,2417622-2418134 28 5.9
07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-16... 28 5.9
01_01_0012 + 71903-72935,73468-73981,74619-76008 28 5.9
>08_02_1161 + 24805777-24806356,24806447-24806922
Length = 351
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 578 RRLLPASNSARGESARSPMP 637
R LLPAS +ARG +AR P+P
Sbjct: 19 RLLLPASGAARGAAARLPLP 38
>06_03_0608 +
22705321-22705652,22705809-22706178,22706264-22706656,
22707183-22707204,22707257-22707928,22708019-22708494
Length = 754
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 578 RRLLPASNSARGESARSPMP 637
R LLPAS +ARG +AR P+P
Sbjct: 19 RLLLPASGAARGAAARLPLP 38
>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
Length = 417
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 412 RQPQNERASTDTHQIDDPI-HVISMPDEETMQQSRQTTTLW 531
R + R +D H+ DD + +++SMP EE ++ S LW
Sbjct: 177 RVMEERRKVSDLHKRDDLLSYMLSMPQEERIEDSDVIAVLW 217
>08_02_0869 -
22031889-22032017,22032114-22032204,22032289-22032389,
22033262-22033303,22033393-22033491,22033616-22033753,
22033853-22034428,22034897-22035070,22035155-22035290,
22035694-22035725,22036873-22037125,22037216-22037304,
22037771-22037824,22038801-22038992,22039065-22039229
Length = 756
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 367 LLICAAMCCWLQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQTTTLWAGAPP 546
LLIC A C ++ Q + A H P V++M + T S + L +G+P
Sbjct: 242 LLICGAPCILIRGCRLQNRVSAAPPPLHAETLPHGVVTMRCDITTCSSSHVSLLVSGSPQ 301
Query: 547 T-YDDAIKLN 573
T +DD + N
Sbjct: 302 TCFDDKLLEN 311
>12_01_0899 - 8689125-8689383,8689540-8689826
Length = 181
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 578 RRLLPASNSARGESARSPMP 637
R LLPAS +ARG AR P+P
Sbjct: 17 RLLLPASGAARGAVARLPLP 36
>05_07_0352 -
29475855-29476330,29476421-29477165,29477689-29478081,
29478167-29478473,29478694-29479019
Length = 748
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 578 RRLLPASNSARGESARSPMP 637
R LLPAS ARG +AR P+P
Sbjct: 17 RLLLPASGVARGAAARLPLP 36
>05_01_0373 + 2922604-2922921
Length = 105
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 640 SWHRTAGRLSARAVRRRQQSPLDSV*WRRHT 548
+W R GRL R RR+ P + WRR T
Sbjct: 45 AWGREGGRLRRRPSGRRRLRPASATWWRRPT 75
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +2
Query: 305 WLKTTRNRCDMWAWRASSPEHYSSARRCVAGCNLLLGSRKTNGLRLIHIRSTIP 466
WL TT R W+ ASSP +S GC+ GS + + +H+ + +P
Sbjct: 31 WLNTTAARPPDWSPSASSPCKWSH-----VGCDAATGSVTSVTFQSVHLAAPLP 79
>01_06_0993 + 33647301-33647618
Length = 105
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 640 SWHRTAGRLSARAVRRRQQSPLDSV*WRRHT 548
+W R GRL R RR+ P + WRR T
Sbjct: 45 AWGREGGRLRRRPSGRRRLRPASATWWRRPT 75
>09_04_0222 + 15825878-15826451,15826542-15827017
Length = 349
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 578 RRLLPASNSARGESARSPMP 637
R LLP S +ARG +AR P+P
Sbjct: 17 RLLLPVSGAARGAAARLPLP 36
>04_04_1704 -
35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 361 RRRCTPRPHIAPVPRSLQPDP 299
R PRPH++P+P +L DP
Sbjct: 119 RPTARPRPHVSPLPCALHADP 139
>12_01_0317 + 2417147-2417587,2417622-2418134
Length = 317
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 383 AAQMSSAPATMHATPTYRTGSA*SSARPSQLISAPAHNNTMP 258
+A + + P+T+ T +YR A SS+ P QL AH+ P
Sbjct: 38 SAAVQAQPSTLSVTASYRVALASSSSPPLQLRLTWAHSPLGP 79
>07_01_0024 + 159839-159923,160395-160442,160884-160895,161347-161427,
161530-161675,161918-161965,162054-162203,165647-165706,
165788-165859,165960-166409,166640-166839,167239-168236,
168676-168683,169057-169230,169341-169659,169748-169824,
169897-169966,170040-170111,170204-170418,170540-170665,
170751-171046,171133-171157,171163-171303,171400-171498,
171571-171702,171793-171912
Length = 1407
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 459 RSHS-RNINARRGDDATKPPDYDTVGGST 542
R+H +N+ RR DD T PD + +G ST
Sbjct: 1121 RTHCIQNVKKRRFDDVTNSPDVEYLGHST 1149
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +3
Query: 450 SDRRSHSRNINARRGDDATKPPDYDTVGGSTANV*RRHQTESSGDCCRRRTARAESR 620
SDR + ++RR + P + S + +RH+ ES RR+ARA SR
Sbjct: 588 SDRSRDHYSSSSRRNRSRSISPRHKKSSRSDSRSPKRHREESLSPSKSRRSARAGSR 644
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,804,587
Number of Sequences: 37544
Number of extensions: 510977
Number of successful extensions: 1797
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1796
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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