Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021303
(669 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 32 0.37
SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71) 29 3.4
SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11) 28 6.0
SB_21866| Best HMM Match : UCH (HMM E-Value=0) 28 6.0
SB_10302| Best HMM Match : VDE (HMM E-Value=4.4) 28 6.0
SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47) 28 7.9
SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43) 28 7.9
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 28 7.9
SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 28 7.9
SB_58941| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15) 28 7.9
SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 32.3 bits (70), Expect = 0.37
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -3
Query: 409 QEIAASNTSPRR*VVLRRRCTPRPHIAPVPRSLQPDP 299
QE++ S +R +LR C H+ P+P S +P P
Sbjct: 458 QEVSFSQRFQKRGSILRELCIHAKHVQPIPASTRPPP 494
>SB_20019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Frame = +1
Query: 217 VIRRRQTITKAIQYGMVLLCAGALINWLGLAEDYAEPVRYVGVACI-VAGALLICAAMCC 393
V+ T++K M LLCA + + LG DYA+ + A V+ + AA+C
Sbjct: 15 VLAEISTLSKMSSIKMKLLCAQVVKDLLGETIDYAKVQKLTSDAKFEVSDVKAVIAALCF 74
Query: 394 WLQSPARQPQNERASTDTHQIDDPIHVISMPDE 492
L S A+ + D+ + + + + +P E
Sbjct: 75 ILLSAAKY------TVDSDSLGNELQQLGLPKE 101
>SB_33033| Best HMM Match : G-patch (HMM E-Value=0.71)
Length = 696
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Frame = +2
Query: 272 YVRER*STGWVWLKTTRNRC-----DMWAWRASSPEHYSSARRC 388
YV+E +T VWLKT+ N C W+ + ++P+++ R+C
Sbjct: 417 YVQE--TTYAVWLKTSANSCMRGRPCSWSHKRTTPKNHRDERKC 458
>SB_32922| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +2
Query: 362 EHYSSARRCVAGCNLLLGSRKTNGLRLIHIRSTI 463
+H S + + GC+LL ++ N L +H+R+ +
Sbjct: 341 DHSQSCQELIRGCDLLERQQRKNTLLTLHVRALV 374
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 575 QRRLLPASNSARGESARSPMPGDAPVIP 658
+ R +P +N G + +P P DAP IP
Sbjct: 1860 ETRTIPKTNVVEGGAKITPKPSDAPAIP 1887
>SB_35407| Best HMM Match : PKD (HMM E-Value=1.8e-11)
Length = 159
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 421 QNERASTDTHQIDDPIHVISMPDEETMQQSRQTTTLWAGAPPTY 552
+N + T+ I P+ S+PD T Q S QTT +G Y
Sbjct: 32 KNVSGNNATYIISGPLRNASIPDTPTPQFSTQTTATISGGTVKY 75
>SB_21866| Best HMM Match : UCH (HMM E-Value=0)
Length = 2165
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 602 CSTPATVAAGFSLMASSYVG 543
CSTPAT+ AGF L+ + G
Sbjct: 1196 CSTPATLVAGFDLLVALCTG 1215
>SB_10302| Best HMM Match : VDE (HMM E-Value=4.4)
Length = 578
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/51 (21%), Positives = 25/51 (49%)
Frame = -2
Query: 302 PSQLISAPAHNNTMPYCMAFVIVCLRLMTCLFFYSLTRIIYTGPISNITAP 150
P++++ P +P C+ FV C+ + + + TR+++ P + P
Sbjct: 253 PTRVVFVPTRVVFVPTCVVFVPTCVAFVPTIVIFVPTRVVFV-PFRAVFVP 302
>SB_52432| Best HMM Match : NDUF_B7 (HMM E-Value=0.47)
Length = 1250
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 257 YCMAFVIVCLRLMTCLFFYSLTRIIYTGPISNIT--APEKKT 138
YC+AF ++C MTC + + +T + +T A E++T
Sbjct: 351 YCIAFPLICGHFMTCTSDFCPEELWHTHAVRMMTEMASERRT 392
>SB_48946| Best HMM Match : RVT_1 (HMM E-Value=1.49939e-43)
Length = 1074
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = -1
Query: 279 RT*QHHAILYG-LCDCLPSSNDMPVFLLLDKNNLHRSDFK-------YHGTRKKNTQNLS 124
RT + + Y L CLPS+ + P+ +L D N D+K HG K N+ L
Sbjct: 222 RTSEEKEVFYEKLRCCLPSAQNNPLIVLGDFNARVGQDYKSWPDVIGKHGVGKMNSNGLM 281
Query: 123 KL--ITKLQLGSSTTL 82
L T+LQL T+
Sbjct: 282 LLEFCTRLQLSVMGTM 297
>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = -1
Query: 279 RT*QHHAILYG-LCDCLPSSNDMPVFLLLDKNNLHRSDFK-------YHGTRKKNTQNLS 124
RT + + Y L CLPS+ + P+ +L D N D+K HG K N+ L
Sbjct: 77 RTSEEKEVFYEKLRCCLPSAQNNPLIVLGDFNARVGQDYKSWPDVIGKHGVGKMNSNGLM 136
Query: 123 KL--ITKLQLGSSTTL 82
L T+LQL T+
Sbjct: 137 LLEFCTRLQLSVMGTM 152
>SB_15964| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 602
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = -1
Query: 279 RT*QHHAILYG-LCDCLPSSNDMPVFLLLDKNNLHRSDFK-------YHGTRKKNTQNLS 124
RT + + Y L CLPS+ + P+ +L D N D+K HG K N+ L
Sbjct: 162 RTSEEKEVFYEKLRCCLPSAQNNPLIVLGDFNARVGQDYKSWPDVIGKHGVGKMNSNGLM 221
Query: 123 KL--ITKLQLGSSTTL 82
L T+LQL T+
Sbjct: 222 LLEFCTRLQLSVMGTM 237
>SB_15148| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 683
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = -1
Query: 279 RT*QHHAILYG-LCDCLPSSNDMPVFLLLDKNNLHRSDFK-------YHGTRKKNTQNLS 124
RT + + Y L CLPS+ + P+ +L D N D+K HG K N+ L
Sbjct: 162 RTSEEKEVFYEKLRCCLPSAQNNPLIVLGDFNARVGQDYKSWPDVIGKHGVGKMNSNGLM 221
Query: 123 KL--ITKLQLGSSTTL 82
L T+LQL T+
Sbjct: 222 LLEFCTRLQLSVMGTM 237
>SB_58941| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-15)
Length = 327
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Frame = -1
Query: 279 RT*QHHAILYG-LCDCLPSSNDMPVFLLLDKNNLHRSDFK-------YHGTRKKNTQNLS 124
RT + + Y L CLPS+ + P+ +L D N D+K HG K N+ L
Sbjct: 133 RTSEEKEVFYEKLRCCLPSAQNNPLIVLGDFNARVGQDYKSWPDVIGKHGVGKMNSNGLM 192
Query: 123 KL--ITKLQLGSSTTL 82
L T+LQL T+
Sbjct: 193 LLEFCTRLQLSVMGTM 208
>SB_51830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 582
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 454 IDDPIHVISMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNP 576
IDD VI M D++ + T A A ++ +IKLNP
Sbjct: 365 IDDLTQVIDMDDDKASTKIHFLTEKIAEAKEDFEKSIKLNP 405
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,386,921
Number of Sequences: 59808
Number of extensions: 533306
Number of successful extensions: 1486
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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