Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021303
(669 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U94364-1|AAB84379.1| 461|Homo sapiens glycogenin-2 gamma protein. 33 0.70
U94362-1|AAB84377.1| 501|Homo sapiens glycogenin-2 alpha protein. 33 0.70
BC023152-1|AAH23152.1| 470|Homo sapiens glycogenin 2 protein. 33 0.70
AF179624-1|AAF61855.1| 501|Homo sapiens glycogenin 2 protein. 33 0.70
AF426262-1|AAM53518.1| 96|Homo sapiens C21orf85 protein protein. 31 4.9
BC132898-1|AAI32899.1| 295|Homo sapiens transmembrane protein 4... 30 6.5
AY358775-1|AAQ89135.1| 295|Homo sapiens WGAR9166 protein. 30 6.5
AL158069-1|CAD18889.1| 472|Homo sapiens transmembrane protein 2... 30 6.5
AL139004-1|CAH73406.1| 295|Homo sapiens transmembrane protein 4... 30 6.5
AJ549246-1|CAD70489.1| 105|Homo sapiens putative DYT3 protein p... 30 6.5
AF087142-1|AAC62086.1| 473|Homo sapiens TED protein protein. 30 6.5
>U94364-1|AAB84379.1| 461|Homo sapiens glycogenin-2 gamma protein.
Length = 461
Score = 33.5 bits (73), Expect = 0.70
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 406 PARQPQNERAS-TDTHQIDDPIHVI-SMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNPA 579
P QP + A T+T I P + + S+ EET + S++ A P+ DA++++ A
Sbjct: 354 PLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAE-ALRDPSLQDALEVDLA 412
Query: 580 ATVA--GVEQRARRVGPQSDARR 642
+V+ +E++ + + P+ + R+
Sbjct: 413 VSVSQISIEEKVKELSPEEERRK 435
>U94362-1|AAB84377.1| 501|Homo sapiens glycogenin-2 alpha protein.
Length = 501
Score = 33.5 bits (73), Expect = 0.70
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 406 PARQPQNERAS-TDTHQIDDPIHVI-SMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNPA 579
P QP + A T+T I P + + S+ EET + S++ A P+ DA++++ A
Sbjct: 394 PLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAE-ALRDPSLQDALEVDLA 452
Query: 580 ATVA--GVEQRARRVGPQSDARR 642
+V+ +E++ + + P+ + R+
Sbjct: 453 VSVSQISIEEKVKELSPEEERRK 475
>BC023152-1|AAH23152.1| 470|Homo sapiens glycogenin 2 protein.
Length = 470
Score = 33.5 bits (73), Expect = 0.70
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 406 PARQPQNERAS-TDTHQIDDPIHVI-SMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNPA 579
P QP + A T+T I P + + S+ EET + S++ A P+ DA++++ A
Sbjct: 363 PLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAE-ALRDPSLQDALEVDLA 421
Query: 580 ATVA--GVEQRARRVGPQSDARR 642
+V+ +E++ + + P+ + R+
Sbjct: 422 VSVSQISIEEKVKELSPEEERRK 444
>AF179624-1|AAF61855.1| 501|Homo sapiens glycogenin 2 protein.
Length = 501
Score = 33.5 bits (73), Expect = 0.70
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +1
Query: 406 PARQPQNERAS-TDTHQIDDPIHVI-SMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNPA 579
P QP + A T+T I P + + S+ EET + S++ A P+ DA++++ A
Sbjct: 394 PLSQPSPQPADFTETETILQPANKVESVSSEETFEPSQELPAE-ALRDPSLQDALEVDLA 452
Query: 580 ATVA--GVEQRARRVGPQSDARR 642
+V+ +E++ + + P+ + R+
Sbjct: 453 VSVSQISIEEKVKELSPEEERRK 475
>AF426262-1|AAM53518.1| 96|Homo sapiens C21orf85 protein protein.
Length = 96
Score = 30.7 bits (66), Expect = 4.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 668 QVDLGSQVRLLASDCGPTLRARCSTPATVAAGFSLMASSYV 546
Q +Q + + S G + R STPA + FS+MA++Y+
Sbjct: 25 QAKESTQNKEILSGTGINFKKRISTPAKITTYFSIMATNYI 65
>BC132898-1|AAI32899.1| 295|Homo sapiens transmembrane protein 46
protein.
Length = 295
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 337 VGVACIVAGALLICAAMCCWLQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQ 516
V VA I+ G+L+ AA CC P + PQ RA +++ + I +I SRQ
Sbjct: 124 VFVAFIILGSLV--AACCCRCLRPKQDPQQSRA-PGGNRLMETIPMIPSASTSRGSSSRQ 180
Query: 517 TTT 525
++T
Sbjct: 181 SST 183
>AY358775-1|AAQ89135.1| 295|Homo sapiens WGAR9166 protein.
Length = 295
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 337 VGVACIVAGALLICAAMCCWLQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQ 516
V VA I+ G+L+ AA CC P + PQ RA +++ + I +I SRQ
Sbjct: 124 VFVAFIILGSLV--AACCCRCLRPKQDPQQSRA-PGGNRLMETIPMIPSASTSRGSSSRQ 180
Query: 517 TTT 525
++T
Sbjct: 181 SST 183
>AL158069-1|CAD18889.1| 472|Homo sapiens transmembrane protein 28
protein.
Length = 472
Score = 30.3 bits (65), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 358 AGALLICAAMCCWLQSPARQP--QNERA 435
A AL IC CCW P+ +P +ERA
Sbjct: 13 AAALTICCCCCCWAPRPSDKPCADSERA 40
>AL139004-1|CAH73406.1| 295|Homo sapiens transmembrane protein 46
protein.
Length = 295
Score = 30.3 bits (65), Expect = 6.5
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 337 VGVACIVAGALLICAAMCCWLQSPARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQ 516
V VA I+ G+L+ AA CC P + PQ RA +++ + I +I SRQ
Sbjct: 124 VFVAFIILGSLV--AACCCRCLRPKQDPQQSRA-PGGNRLMETIPMIPSASTSRGSSSRQ 180
Query: 517 TTT 525
++T
Sbjct: 181 SST 183
>AJ549246-1|CAD70489.1| 105|Homo sapiens putative DYT3 protein
protein.
Length = 105
Score = 30.3 bits (65), Expect = 6.5
Identities = 18/56 (32%), Positives = 22/56 (39%)
Frame = +1
Query: 256 YGMVLLCAGALINWLGLAEDYAEPVRYVGVACIVAGALLICAAMCCWLQSPARQPQ 423
+G +LL G LG A V G V L +CCW PAR P+
Sbjct: 2 HGALLLLRGLGFLLLGRARGDVVVVAVAGRVLTVLVVALPPRTLCCWTSPPARPPR 57
>AF087142-1|AAC62086.1| 473|Homo sapiens TED protein protein.
Length = 473
Score = 30.3 bits (65), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 358 AGALLICAAMCCWLQSPARQP--QNERA 435
A AL IC CCW P+ +P +ERA
Sbjct: 13 AAALTICCCCCCWAPRPSDKPCADSERA 40
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,105,777
Number of Sequences: 237096
Number of extensions: 2512948
Number of successful extensions: 6904
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6903
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -