Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021303
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    29   3.7  
At5g13710.1 68418.m01596 sterol 24-C-methyltransferase, putative...    28   4.9  
At3g42160.1 68416.m04332 pectinesterase-related contains weak si...    28   4.9  
At2g28490.1 68415.m03462 cupin family protein similar to preproM...    28   6.5  

>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 409 ARQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQTTTLWAGA-PPTYDDAIKLNPAAT 585
           A +   + A  D   +   ++  S+P  E  + SRQ   LWA +  P  D   ++ P   
Sbjct: 677 AAESMRDAALRDGALLRHLLNAFSLPASERREVSRQLVALWADSYQPALDLLSRVLPPGL 736

Query: 586 VAGVEQRARRVGPQSD 633
           VA +  R   V   +D
Sbjct: 737 VAYLHTRPDDVVDDTD 752


>At5g13710.1 68418.m01596 sterol 24-C-methyltransferase, putative
           similar to SP:P25087 Sterol 24-C-methyltransferase,
           Delta(24)-sterol C- methyltransferase, Saccharomyces
           cerevisiae
          Length = 336

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 234 LPSSNDMPVFLLLDKNNLHRSDFKYHGTRKKNTQNLSKLITKLQLGSSTTLR 79
           L   + +P +L LDKN+   S F+     +  T+N+ K++  ++L    + R
Sbjct: 252 LAKDSPVPWYLPLDKNHFSLSSFRLTAVGRFITKNMVKILEYIRLAPQGSQR 303


>At3g42160.1 68416.m04332 pectinesterase-related contains weak
           similarity to Swiss-Prot:Q96575 pectinesterase 2
           precursor  (Pectin methylesterase 2) (PE 2)
           [Lycopersicon esculentum]
          Length = 153

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = +1

Query: 412 RQPQNERASTDTHQIDDPIHVISMPDEETMQQSRQTTTLWAGAPPTYDDAIKLNPAATV 588
           R P+  R +   H+     H      +E +Q+  Q T++WAG       A++++  ATV
Sbjct: 80  RGPKASRQAKPRHKF---FHTNPRVVQEVLQEVTQRTSMWAGPKKRQAVALRISADATV 135


>At2g28490.1 68415.m03462 cupin family protein similar to
           preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]
           GI:691752, allergen Gly m Bd 28K [Glycine max]
           GI:12697782, vicilin [Matteuccia struthiopteris]
           GI:1019792; contains Pfam profile PF00190: Cupin
          Length = 511

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -2

Query: 665 VDLGSQVRLLASDCGPTLRARCSTPATVAAGFSLMASSYVGGAPA 531
           +  GS   L  +  G  L   CS   T + GF      Y+GG P+
Sbjct: 171 IPAGSVFYLHNTGLGQRLHVICSIDPTQSLGFETFQPFYIGGGPS 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,722,840
Number of Sequences: 28952
Number of extensions: 347151
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)