Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021300
(680 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 164 1e-41
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch... 137 1e-33
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 1.1
SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr 1||... 27 1.9
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 26 5.8
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 25 7.7
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 164 bits (398), Expect = 1e-41
Identities = 82/167 (49%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Frame = +3
Query: 12 KWKELTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPV 191
KWKELT + A FC+ VGYP LVRPSYVLSGAAMN S +L +YL+ A ++K+HPV
Sbjct: 1145 KWKELTSFDEADKFCDTVGYPVLVRPSYVLSGAAMNTVYSQSDLHSYLQQAVAINKDHPV 1204
Query: 192 VISKFIMDAKEIDVDVVAADG*FIAWLFPNMLKTP-VCTLETQP**PRHRILTTKL*KR* 368
VISK+I +AKEI++D VA +G + + ++ V + + P + T + +
Sbjct: 1205 VISKYIENAKEIELDAVAREGKMVMHVISEHVENAGVHSGDATLVLPPQDLAPTTIERIV 1264
Query: 369 EISGIIAETLDVTGPFNMQLIAKDNDLKVIECNVRVSRSFPFVSKTL 509
+ + I E L++TGP+N+Q IAKDN++KVIECNVR SRSFPFVSK +
Sbjct: 1265 DAAAKIGEALNITGPYNIQFIAKDNEIKVIECNVRASRSFPFVSKVI 1311
Score = 80.2 bits (189), Expect = 3e-16
Identities = 53/128 (41%), Positives = 70/128 (54%), Gaps = 4/128 (3%)
Frame = +2
Query: 272 VSEHVENAGVHSGDATLVTPPQDINNETLEKIRNIW---NHS*NFRRNWSI*YATDSKR* 442
+SEHVENAGVHSGDATLV PPQD+ T+E+I + + N ++I +
Sbjct: 1232 ISEHVENAGVHSGDATLVLPPQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNE- 1290
Query: 443 *PKSYRMQR*GIEIFSICV*NIDHDFVAMATKIILGLPVEP-ANVMAGCGKVGVKVPQFS 619
K F I D ++MAT +I+G P++P +V V VKVPQFS
Sbjct: 1291 -IKVIECNVRASRSFPFVSKVIGVDMISMATDVIMGNPIQPYPDVDLPRDYVAVKVPQFS 1349
Query: 620 FSRLAGAD 643
FSRL+GAD
Sbjct: 1350 FSRLSGAD 1357
Score = 28.7 bits (61), Expect = 0.82
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 278 EHVENAGVHSGDATLVTPPQDINNETLEKIR 370
E+ + G+H+GD+ +V P Q + +E +R
Sbjct: 698 ENFDPLGIHTGDSIVVAPSQTLTDEDYNMLR 728
>SPBC215.08c |arg4||carbamoyl-phosphate synthase
Arg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1160
Score = 137 bits (332), Expect = 1e-33
Identities = 79/173 (45%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Frame = +3
Query: 15 WKELTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVV 194
WKELT + A F VGYP LVRPSYVLSGAAM+V L+ L++AS +S +HPVV
Sbjct: 761 WKELTSVAEASKFANAVGYPVLVRPSYVLSGAAMSVIRDESSLKDKLENASAVSPDHPVV 820
Query: 195 ISKFIMDAKEIDVDVVAADG*FIAWLFPNMLKTP-VCTLETQP**PRHRILTTKL*KR*E 371
I+KFI A+E+DVD VA+ G + ++ V + + P + + L + E
Sbjct: 821 ITKFIEGARELDVDAVASKGKLLVHAVSEHVENAGVHSGDATIALPPYSLSEDILSRCKE 880
Query: 372 ISGIIAETLDVTGPFNMQLIAKDN-------DLKVIECNVRVSRSFPFVSKTL 509
I+ + + +TGP+NMQ+I N DLKVIECN+R SRSFPFVSKTL
Sbjct: 881 IAEKVCKAFQITGPYNMQIILAQNPDKPDTPDLKVIECNLRASRSFPFVSKTL 933
Score = 58.4 bits (135), Expect = 9e-10
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 10/135 (7%)
Frame = +2
Query: 269 AVSEHVENAGVHSGDATLVTPPQDINNETLEKIRNIWNHS*NFRR-----NWSI*YATDS 433
AVSEHVENAGVHSGDAT+ PP ++ + L + + I + N I A +
Sbjct: 846 AVSEHVENAGVHSGDATIALPPYSLSEDILSRCKEIAEKVCKAFQITGPYNMQIILAQNP 905
Query: 434 KR**PKSYRMQR*GIEI---FSICV*NIDHDFVAMATKIILGLPVEPANVMAGCGK--VG 598
+ ++ + F + +F+ +AT+ I+ V A + + V
Sbjct: 906 DKPDTPDLKVIECNLRASRSFPFVSKTLGVNFIDVATRSIIDQEVPAARDLMAVHRDYVC 965
Query: 599 VKVPQFSFSRLAGAD 643
VKVPQFS++RLAGAD
Sbjct: 966 VKVPQFSWTRLAGAD 980
Score = 51.6 bits (118), Expect = 1e-07
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 4/164 (2%)
Frame = +3
Query: 24 LTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISK 203
++ ++ A+ E+V YP ++R +Y L G AN+ +EL++ +A LS +++ K
Sbjct: 228 VSTVDEALQAAEKVSYPVIIRSAYSLGGLGSGFANNKEELQSM--AAKSLSLTPQILVEK 285
Query: 204 FIMDAKEIDVDVV--AADG*FIAWLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EIS 377
+ KE++ +VV AA+ N + T ++ P + + +
Sbjct: 286 SLKGWKEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTAA 345
Query: 378 GIIAETLDVTGPFNMQLIAKDNDL--KVIECNVRVSRSFPFVSK 503
I L V G N+Q N L +VIE N R+SRS SK
Sbjct: 346 IKIIRHLGVVGECNVQYALSPNSLEYRVIEVNARLSRSSALASK 389
Score = 29.1 bits (62), Expect = 0.62
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 278 EHVENAGVHSGDATLVTPPQDINNETLEKIR 370
E+ + G+H+GD+ +V P Q +++E +R
Sbjct: 312 ENFDPLGIHTGDSIVVAPSQTLSDEEYHMLR 342
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +3
Query: 123 ANSHQELETYLKSASQLSKEHPVVISKFIMDAKEIDVDVVAADG*FIAWLFPN 281
+N QELE L+ Q + EH +I + + KE+ A FI+ L N
Sbjct: 221 SNQIQELENLLRKEKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISALSAN 273
>SPAC4F10.02 |||aminopeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 467
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 630 SLENENCGTFTPTFPHPAITLAGSTGSPRIILVAI 526
SL+NE+C P+F H I + G+ L A+
Sbjct: 276 SLDNESCVRVVPSFDHEEIGSVSAQGAESTFLPAV 310
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 272 VSEHVENAGVHSGDATLVTPPQDINNETL 358
+S H GVH D T+VTP D N + +
Sbjct: 814 LSNHPIAGGVHLPDLTVVTPVFDNNKDII 842
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Frame = -1
Query: 320 GLRLQSAHRRFQHVRKQPC---NKLSISCYNVYVYF-FCIHNEFRNYYWMFF 177
G+ L S+ R Q + +P N ++ + Y+++ + C++ +FR +Y M+F
Sbjct: 70 GISLDSSFRVIQVGQPEPQYGNNAVTNTKYDLFTFLPKCLYEQFRYFYNMYF 121
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/27 (29%), Positives = 19/27 (70%)
Frame = +2
Query: 302 HSGDATLVTPPQDINNETLEKIRNIWN 382
H+ + +P ++N+ T+E+++N+WN
Sbjct: 640 HNCTVRVESPVNELNS-TMEEVKNVWN 665
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,693
Number of Sequences: 5004
Number of extensions: 61509
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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