Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021300
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705     85   5e-17
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630...    29   3.4  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    29   4.5  
01_05_0227 - 19512866-19514983                                         29   4.5  
01_01_1178 + 9385261-9385374,9385457-9385620,9386251-9386453,938...    28   6.0  

>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
          Length = 1172

 Score = 85.0 bits (201), Expect = 5e-17
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
 Frame = +3

Query: 42   AIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISKFIMDAK 221
            A+    EVGYP +VRPSYVL G AM +  + ++L  YL +A Q+  E PV++ K+++DA 
Sbjct: 783  ALSIASEVGYPVVVRPSYVLGGRAMEIVYNDEKLIKYLATAVQVDPERPVLVDKYLIDAI 842

Query: 222  EIDVDVVA--ADG*FIAWLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EISGIIAET 395
            EIDVD +A       I  +  ++ +  + + ++    P   +    L      +  +A+ 
Sbjct: 843  EIDVDALADSVGNVVIGGIMEHIEQAGIHSGDSACSLPTRTVSAKCLDIIRSWTTKLAKR 902

Query: 396  LDVTGPFNMQ-LIAKDNDLKVIECNVRVSRSFPFVSKTL 509
            L+V G  N Q  I    ++ ++E N R SR+ PFVSK +
Sbjct: 903  LNVCGLMNCQYAITTSGEVFLLEANPRASRTVPFVSKAI 941



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 6/187 (3%)
 Frame = +3

Query: 27  TDLESAIGFCEEVG-YPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISK 203
           T LE  I   E++G +P +VRP++ L G    +A +  E E   ++    S    V++ K
Sbjct: 220 TTLEECISIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVEK 279

Query: 204 FIMDAKEIDVDVVA--ADG*FIAWLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EIS 377
            ++  KE +++V+   AD   I     N+    V T ++    P   +   +  +  + S
Sbjct: 280 SLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYS 339

Query: 378 GIIAETLDVT-GPFNMQLIAK--DNDLKVIECNVRVSRSFPFVSKTLIMILWQWPLKLFW 548
             I   + V  G  N+Q      D ++ VIE N RVSRS    SK     + +   KL  
Sbjct: 340 VAIIREIGVECGGSNVQFAVNPADGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSV 399

Query: 549 DYQLNRL 569
            Y L+++
Sbjct: 400 GYTLDQI 406



 Score = 35.5 bits (78), Expect = 0.039
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +2

Query: 272 VSEHVENAGVHSGDATLVTPPQDINNETLEKIRN 373
           + EH+E AG+HSGD+    P + ++ + L+ IR+
Sbjct: 861 IMEHIEQAGIHSGDSACSLPTRTVSAKCLDIIRS 894



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 278 EHVENAGVHSGDATLVTPPQDINNETLEKIRN 373
           E+++  GVH+GD+  V P Q + ++  +++R+
Sbjct: 306 ENIDPMGVHTGDSITVAPAQTLTDKEYQRLRD 337


>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
            29363099-29363206,29363583-29363697,29363781-29364819,
            29364904-29365014,29365268-29365326,29366601-29366763,
            29367162-29367435,29367530-29367680,29367766-29367877,
            29367978-29368143,29368261-29368331,29368474-29368565,
            29368721-29368883,29369134-29369205,29369236-29369263,
            29369519-29369910,29369991-29370106,29370201-29370498,
            29370820-29371139,29371332-29371590,29371985-29372302,
            29372423-29372527,29372648-29372776,29374001-29374381,
            29374467-29374604,29374949-29375185,29375264-29375569
          Length = 2094

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 281  HVENAGVHSGDATLVTPPQDINNETLEKIRNIWNHS*NFRRNWS 412
            H+ ++G+  G A  +   ++++   L +IRN W +   +   WS
Sbjct: 1852 HISSSGIVQGHAYSILQVREVDGHKLVQIRNPWANEVEWNGPWS 1895


>09_06_0311 +
           22218219-22218421,22219157-22219422,22219881-22220050,
           22220149-22220365,22220798-22221021,22221559-22221738,
           22221875-22222013,22222107-22222255,22223394-22223505,
           22223998-22224506,22224661-22224784,22224904-22225178,
           22225507-22225626,22225707-22225769,22225861-22226052,
           22226381-22226440,22226535-22226738,22226926-22227051,
           22227093-22227254,22227357-22227476,22227665-22227820,
           22227895-22227957,22228041-22228168,22228524-22228920,
           22229442-22229544,22229646-22229776,22230096-22230167,
           22230472-22230553,22231083-22231190,22231288-22231429,
           22231659-22231698,22231746-22231876,22232215-22232301,
           22232395-22232605,22232687-22232741,22232836-22232927,
           22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 454 TFRSLSFAISCILNGPV----TSKVSAMIPDISYLF*SFVVNILWRGY*GCVSRVHTGVF 287
           TF   S + S I +GP+    TSK+SA  P +     S      + GY   +SR+H+G+ 
Sbjct: 594 TFSFDSESYSEIFSGPIFLKSTSKISAYYPLVVLQAGS---GNRFGGYWVDLSRIHSGIQ 650

Query: 286 NMFGNS 269
           NM  NS
Sbjct: 651 NMVNNS 656


>01_05_0227 - 19512866-19514983
          Length = 705

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 384 IAETLDVTGPFNMQLIAKDNDLKVIECNV 470
           +AE +D T  F+M  +++DN  KV E N+
Sbjct: 151 VAEAVDSTYTFDMPFLSEDNSQKVFEQNL 179


>01_01_1178 +
           9385261-9385374,9385457-9385620,9386251-9386453,
           9387130-9387362,9387584-9387640,9388120-9388241,
           9388366-9388425,9388426-9388543,9389005-9389286
          Length = 450

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 267 WLFPNMLKTPVCTLETQP 320
           WLFP  +K P+CTL   P
Sbjct: 204 WLFPPQVKFPLCTLAETP 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,012,449
Number of Sequences: 37544
Number of extensions: 384866
Number of successful extensions: 861
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 861
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)