Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021300
(680 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0) 174 5e-44
SB_6566| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0) 43 2e-04
SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.070
SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0) 32 0.49
SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9) 29 2.6
SB_4156| Best HMM Match : Ets (HMM E-Value=0) 29 4.6
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
>SB_1004| Best HMM Match : CPSase_sm_chain (HMM E-Value=0)
Length = 2007
Score = 174 bits (424), Expect = 5e-44
Identities = 98/167 (58%), Positives = 113/167 (67%), Gaps = 1/167 (0%)
Frame = +3
Query: 12 KWKELTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPV 191
+WKELT +ESA FC +V YPCLVRPSYVLSGAAM VA S +LE YL S LS++HPV
Sbjct: 1369 QWKELTTVESAKEFCHKVSYPCLVRPSYVLSGAAMIVAYSDTDLENYLGSEVFLSRDHPV 1428
Query: 192 VISKFIMDAKEIDVDVVAADG*FIAWLFPNMLKTP-VCTLETQP**PRHRILTTKL*KR* 368
VISKFI +AKEIDVD VA DG +A ++ V + + P I + K
Sbjct: 1429 VISKFIQEAKEIDVDAVAQDGKVVAIAVSEHVENAGVHSGDATMVLPPQDINQVTMEKIR 1488
Query: 369 EISGIIAETLDVTGPFNMQLIAKDNDLKVIECNVRVSRSFPFVSKTL 509
I I L VTGPFNMQLIAKD+ LKVIECN+RVSRSFPFVSKTL
Sbjct: 1489 SICYRIGAALSVTGPFNMQLIAKDDQLKVIECNLRVSRSFPFVSKTL 1535
Score = 116 bits (280), Expect = 1e-26
Identities = 71/134 (52%), Positives = 84/134 (62%), Gaps = 5/134 (3%)
Frame = +2
Query: 257 IYCMAVSEHVENAGVHSGDATLVTPPQDINNETLEKIRNIWNH-----S*NFRRNWSI*Y 421
+ +AVSEHVENAGVHSGDAT+V PPQDIN T+EKIR+I S N +
Sbjct: 1451 VVAIAVSEHVENAGVHSGDATMVLPPQDINQVTMEKIRSICYRIGAALSVTGPFNMQLIA 1510
Query: 422 ATDSKR**PKSYRMQR*GIEIFSICV*NIDHDFVAMATKIILGLPVEPANVMAGCGKVGV 601
D + + R+ R F +D DFVAMAT++I GL VEPA M G G+VGV
Sbjct: 1511 KDDQLKVIECNLRVSR----SFPFVSKTLDTDFVAMATRVICGLTVEPALDMDGRGRVGV 1566
Query: 602 KVPQFSFSRLAGAD 643
KVPQFSFSRLAGAD
Sbjct: 1567 KVPQFSFSRLAGAD 1580
>SB_6566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 86.6 bits (205), Expect = 2e-17
Identities = 45/111 (40%), Positives = 69/111 (62%), Gaps = 1/111 (0%)
Frame = +3
Query: 180 EHPVVISKFIMDAKEIDVDVVAADG*FIAWLFPNMLKTP-VCTLETQP**PRHRILTTKL 356
+HPVVI+KF+ A+E+++D VA G + ++ V + + P I + +
Sbjct: 114 DHPVVITKFVTGAREVEMDAVAKRGHVVCHAISEHVENAGVHSGDATLILPPQNIRSDDI 173
Query: 357 *KR*EISGIIAETLDVTGPFNMQLIAKDNDLKVIECNVRVSRSFPFVSKTL 509
K E++ IA+ +++GPFNMQ + KDN + VIECN+R SRSFPFVSKT+
Sbjct: 174 AKIKEVTSKIAKRFNISGPFNMQFLVKDNRVMVIECNLRASRSFPFVSKTI 224
>SB_56060| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
Length = 1006
Score = 43.2 bits (97), Expect = 2e-04
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 4/161 (2%)
Frame = +3
Query: 33 LESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISKFIM 212
+E A+ +++ YP +VR +Y L G + + +L K A ++ + ++I + ++
Sbjct: 534 VEEAVKAAKKIKYPVMVRAAYALGGLGSGLCENEAKLRALAKKALAIAPQ--ILIEQSLL 591
Query: 213 DAKEIDVDVV--AADG*FIAWLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EISGII 386
KE++ +VV AA+ N V T ++ P + + E + +
Sbjct: 592 GWKEVEYEVVRDAANNCITVCNMENFDPLGVHTGDSVVVAPSQTLSNQEYHMLRETAIKV 651
Query: 387 AETLDVTGPFNMQLIAKDNDLK--VIECNVRVSRSFPFVSK 503
+ G N+Q L+ +IE N R+SRS SK
Sbjct: 652 VRHFGIVGECNIQYALHPTSLEYCIIEINARLSRSSALASK 692
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 278 EHVENAGVHSGDATLVTPPQDINNETLEKIR 370
E+ + GVH+GD+ +V P Q ++N+ +R
Sbjct: 615 ENFDPLGVHTGDSVVVAPSQTLSNQEYHMLR 645
>SB_46547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1058
Score = 34.7 bits (76), Expect = 0.070
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +3
Query: 36 ESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLS----KEHPVVISK 203
E A FCEE G P + + +Y G M V +++E + AS + + + I K
Sbjct: 191 EEAKQFCEEHGLPVITKAAYGGGGRGMRVIWKMEDVEEFFNLASNEAYAAFGDGSMFIEK 250
Query: 204 FIMDAKEIDVDVV 242
FI + I+V V+
Sbjct: 251 FIEKPRHIEVQVM 263
>SB_15457| Best HMM Match : CPSase_L_D2 (HMM E-Value=0)
Length = 295
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 36 ESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSAS 167
E A FCEE G P + + +Y G M V + ++E Y AS
Sbjct: 30 EDARAFCEEHGLPVITKAAYGGGGRGMRVIWNLDDVEKYFTLAS 73
>SB_53601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 30 DLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYL 155
D E A+ E+GYP +++ S G M VA + +E ++
Sbjct: 171 DAEDAVKIANEIGYPVMLKASAGGGGKGMRVAWNDEEASPFV 212
>SB_8045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 154
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 345 LISCGGVTRVASPECTPAFST 283
L+SC +T+V SP CTP ST
Sbjct: 66 LLSCRQITKVNSPHCTPLKST 86
>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
Length = 483
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y N ST + + NW + NN+S H
Sbjct: 400 WSTYDNWSTHNNWSTHDNWSNHNNWSAH 427
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y+N ST + + NW + NN+S H
Sbjct: 70 WSTYNNWSTYNNWSTYHNWSTYNNWSTH 97
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y+N ST + + NW + NN+S H
Sbjct: 388 WSTYNNWSTYNNWSTYDNWSTHNNWSTH 415
>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
Length = 516
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = -3
Query: 639 APASLENENCGTFTPTF------PHPAITLAGSTGSPR 544
APAS+ ++C +TPT PHP IT + S R
Sbjct: 246 APASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSR 283
>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y+N ST + + NW + NN+S H
Sbjct: 48 WSTYNNWSTYNNWSTHNNWSTYNNWSTH 75
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFS 533
W+ Y+N ST + +R NW + NN+S
Sbjct: 90 WSTYNNWSTHNNWNTRNNWSTHNNWS 115
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y N ST + S NW NN+S H
Sbjct: 6 WSAYHNWSTYENWSSHNNWSIHNNWSTH 33
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 610 WNFYSNLSTSRHHISRFNW*SQNNFSGH 527
W+ Y+N ST + + NW + NN+S H
Sbjct: 36 WSTYNNWSTHNNWSTYNNWSTYNNWSTH 63
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,763,061
Number of Sequences: 59808
Number of extensions: 444650
Number of successful extensions: 947
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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