Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021300
         (680 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.41 
U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase...    25   2.9  
AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein p...    24   3.9  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   3.9  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    24   5.1  
AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprote...    23   6.7  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   6.7  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   6.7  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    23   8.9  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.5 bits (58), Expect = 0.41
 Identities = 18/76 (23%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = +3

Query: 30  DLESAIGFCEEVGYPCL------VRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPV 191
           +LE A    +  G  C+      V     L+G   N + S  E++      SQL +EH  
Sbjct: 636 NLERATELAKSTGLDCVTLEGDQVSSKGSLTGGYFNTSRSRLEMQKKRSEYSQLIQEHEK 695

Query: 192 VISKFIMDAKEIDVDV 239
            ++ F  + K+ + ++
Sbjct: 696 ELADFRAELKQTEANI 711


>U89799-1|AAD03792.1|  332|Anopheles gambiae Tc1-like transposase
           protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = +3

Query: 132 HQELETYLKSASQLSKEHPVVISKFIM-DAKEIDVDVVAADG*FIAWLFPNMLKTPVCTL 308
           H  +E  ++ A +         SK I  D   I++D   +DG    W FPN    P  T+
Sbjct: 116 HHHVEARIRFAEEHLAASIFWWSKIIFSDESRINLD--GSDGIKYVWRFPNQAYHPKNTI 173

Query: 309 ET 314
           +T
Sbjct: 174 KT 175


>AB090821-1|BAC57917.1|  353|Anopheles gambiae gag-like protein
           protein.
          Length = 353

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 342 ISCGGVTRVASPECTPAFSTC 280
           I CGG  R+A+P C    S C
Sbjct: 333 IVCGGPHRIAAPMCKGPPSQC 353


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -1

Query: 530 PLPQNHDQCFRHKWKRSRYPNVAF 459
           P  + HD+C   +WK +++   +F
Sbjct: 295 PAGRQHDRCDSRRWKTTQFNRQSF 318


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 449 KSYRMQR*GIEIFSICV*NIDHDFVAMATKIILGLPVEPANVMAGCGKVGV 601
           +  R Q  G+E + + V  +   F  M T ++  LPV+  +V+ G GKV +
Sbjct: 367 RDLRNQITGLEGYKVEV-TMKTSFSGMQTALVK-LPVKLVSVVTGAGKVQI 415


>AF510715-1|AAP47144.1|  470|Anopheles gambiae Rh-like glycoprotein
           protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 539 IILGLPVEPANVMAGCGKVGVKVPQFSFSRLAGADV 646
           ++  L V+ A +M GC ++   +   S   L GAD+
Sbjct: 93  LVAALVVQWAIIMRGCYEMEDGIIPISLQNLIGADI 128


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 342 ISCGGVTRVASPECT 298
           I+C G T +ASP CT
Sbjct: 108 IACIGFTWIASPACT 122


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 342 ISCGGVTRVASPECT 298
           I+C G T +ASP CT
Sbjct: 139 IACIGFTWIASPACT 153


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 336 CGGVTRVASPECTPAFSTC 280
           CGG  R+A+  C     TC
Sbjct: 280 CGGPHRIAAASCAVTSMTC 298


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 742,178
Number of Sequences: 2352
Number of extensions: 15470
Number of successful extensions: 22
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68577420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)