Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021300
(680 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 180 1e-45
Z81074-2|CAB03038.2| 671|Caenorhabditis elegans Hypothetical pr... 34 0.11
U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membran... 29 4.1
U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical pr... 28 5.4
AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical ... 28 5.4
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 28 7.1
U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein... 27 9.4
U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein ... 27 9.4
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ... 27 9.4
AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protei... 27 9.4
AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protei... 27 9.4
AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protei... 27 9.4
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
D2085.1 protein.
Length = 2198
Score = 180 bits (437), Expect = 1e-45
Identities = 91/170 (53%), Positives = 123/170 (72%), Gaps = 1/170 (0%)
Frame = +3
Query: 3 ARAKWKELTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKE 182
++ +WK+ ++E A FC +VGYPCL+RPSYVLSGAAMNVA++ ++LE +LK A+ ++KE
Sbjct: 1063 SQPQWKKSENMEDAKNFCAQVGYPCLIRPSYVLSGAAMNVAHNAEDLEVFLKQAAVVAKE 1122
Query: 183 HPVVISKFIMDAKEIDVDVVAADG*FIAWLFPNMLKTP-VCTLETQP**PRHRILTTKL* 359
HPVV+SKFI +AKE+DVD VA DG + ++ V + + P + L
Sbjct: 1123 HPVVVSKFINEAKELDVDAVALDGKLVVMAVSEHIENAGVHSGDATLVTPAQDMNKLTLD 1182
Query: 360 KR*EISGIIAETLDVTGPFNMQLIAKDNDLKVIECNVRVSRSFPFVSKTL 509
+ +I+ IAE +VTGPFNMQLIAK+N+LKVIECN+RVSRSFPFVSKTL
Sbjct: 1183 RIKDITFRIAEAFNVTGPFNMQLIAKNNELKVIECNLRVSRSFPFVSKTL 1232
Score = 95.5 bits (227), Expect = 3e-20
Identities = 61/136 (44%), Positives = 81/136 (59%), Gaps = 9/136 (6%)
Frame = +2
Query: 266 MAVSEHVENAGVHSGDATLVTPPQDINNETLEKIRNI-WNHS*NFRRNWSI*YATDSKR* 442
MAVSEH+ENAGVHSGDATLVTP QD+N TL++I++I + + F +K
Sbjct: 1151 MAVSEHIENAGVHSGDATLVTPAQDMNKLTLDRIKDITFRIAEAFNVTGPFNMQLIAKNN 1210
Query: 443 *PKSYRMQR*GIEIFSICV*NIDHDFVAMATKIILG-------LPVEP-ANVMAGCGKVG 598
K F +D+DFVA+AT+ ++ ++P A ++ G G+VG
Sbjct: 1211 ELKVIECNLRVSRSFPFVSKTLDYDFVALATRAMMASDSPAIRATIKPTATLLKGKGRVG 1270
Query: 599 VKVPQFSFSRLAGADV 646
VKVPQFSFSRLAGADV
Sbjct: 1271 VKVPQFSFSRLAGADV 1286
Score = 53.2 bits (122), Expect = 2e-07
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 4/166 (2%)
Frame = +3
Query: 18 KELTDLESAIGFCEEVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVI 197
K T +E AI EE+GYP LVR +Y L G A++ +EL + A L+ + V++
Sbjct: 530 KAATTMEGAIEAAEELGYPVLVRAAYALGGLGSGFADNREELIAIAQQA--LAHSNQVLV 587
Query: 198 SKFIMDAKEIDVDVV--AADG*FIAWLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*E 371
K + KE++ +VV A D N+ + T E+ P + +
Sbjct: 588 DKSLKGWKEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESVVVAPSQTLSDREYNALRT 647
Query: 372 ISGIIAETLDVTGPFNMQLIAKDNDLK--VIECNVRVSRSFPFVSK 503
+ + L + G N+Q L +IE N R+SRS SK
Sbjct: 648 CAIKVIRHLGIIGECNIQYALDPYSLTYYIIEVNARLSRSSALASK 693
>Z81074-2|CAB03038.2| 671|Caenorhabditis elegans Hypothetical
protein F32B6.2 protein.
Length = 671
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 60 EVGYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKE----HPVVISKFIMDAKEI 227
E+GYP +++ Y G M +A + E E L SA +K+ +++ KF+ + +
Sbjct: 167 EIGYPVMLKAVYGGGGKGMRIAWNEAEFEEKLASARNEAKKSFGNDEMLVEKFVEKPRHV 226
Query: 228 DVDV 239
+V V
Sbjct: 227 EVQV 230
>U40187-3|AAA81160.2| 430|Caenorhabditis elegans Ectopic membrane
ruffles in embryoprotein 1 protein.
Length = 430
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/68 (25%), Positives = 31/68 (45%)
Frame = +3
Query: 270 LFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EISGIIAETLDVTGPFNMQLIAKDNDL 449
L+P + P+CT+ P P H I K+ E +LD P +++ + + L
Sbjct: 201 LYPPQVNFPLCTIAHTPRLPEHCIEYIKVVVWPEEKPFEGVSLDADDPIHVEWVLERASL 260
Query: 450 KVIECNVR 473
+ + N+R
Sbjct: 261 RAEKYNIR 268
>U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical
protein ZC487.1b protein.
Length = 409
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/63 (19%), Positives = 28/63 (44%)
Frame = +3
Query: 66 GYPCLVRPSYVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISKFIMDAKEIDVDVVA 245
G+P +VRP ++ + E + + + S + + V+ +++ D E +
Sbjct: 117 GFPAVVRPLRHHCAHSVGFIRNENEFKNWFRRNSSVHRNEHYVVQEYVDDGHEFSAVCSS 176
Query: 246 ADG 254
+DG
Sbjct: 177 SDG 179
>AC087081-5|AAK66038.1| 273|Caenorhabditis elegans Hypothetical
protein Y82E9BL.15 protein.
Length = 273
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 648 VTSAPASLENENCGTFTPTFPHPAITLAGSTGSPRIILVAI 526
VT ++EN TFT FPH ++ +GSP ++ + I
Sbjct: 11 VTCLFETMENSKFHTFTLIFPHISLKSKKMSGSPTLLELPI 51
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 674 PVDAISTPK*RLHRPVLKMKIVELLLQP 591
P + ST + R H P LKM+IV+ +L+P
Sbjct: 1352 PQEKPSTSEVRDHAPCLKMEIVDRVLEP 1379
>U23139-10|AAN65328.1| 558|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 101 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 154
>U23139-9|AAN65327.1| 632|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 175 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 228
>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
ligase protein 1,isoform a protein.
Length = 1051
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 594 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 647
>AY601658-1|AAS98223.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant d protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 101 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 154
>AY601657-1|AAS98222.1| 558|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (62.5 kD) alternative
variant c protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 101 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 154
>AY601656-1|AAS98221.1| 632|Caenorhabditis elegans biotin protein
ligase, holocarboxylasesynthetase (70.9 kD) alternative
variant b protein.
Length = 632
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 589 STSRHHISRFNW*SQNNFSGHCHKIMINVLDTNGKDLDTLTLHSITFRSLSFAI 428
S + I RF + SQNN +K + L+ N K L T + TFRS ++
Sbjct: 175 SKANASILRFAFGSQNNKLKDTNKEFVKFLEKNMKKLPKSTAINETFRSKDVSV 228
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,291,113
Number of Sequences: 27780
Number of extensions: 344454
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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