Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021300
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    29   0.054
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    25   0.88 
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    25   0.88 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.2  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 28.7 bits (61), Expect = 0.054
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
 Frame = +3

Query: 93  YVLSGAAMNVANSHQELETYLKSASQLSKEHPVVISKFIMDAKEIDVDVV--AADG*FIA 266
           + L G     ANS +EL    + A   S +  ++I K +   KE++ +VV  A D     
Sbjct: 1   FSLGGLGSGFANSVKELRNLAQQAFAHSNQ--LIIDKSLKGWKEVEYEVVRDAYDNCITV 58

Query: 267 WLFPNMLKTPVCTLETQP**PRHRILTTKL*KR*EISGI-IAETLDVTGPFNMQLIAKDN 443
               N+    + T E+    P  + L+ K       + I +     + G  N+Q     N
Sbjct: 59  CNMENVDPLGIHTGESIVVAPS-QTLSNKEYNMLRTTAINVIRHFGIVGECNIQYALNPN 117

Query: 444 --DLKVIECNVRVSRSFPFVSK 503
             +  +IE N R+SRS    SK
Sbjct: 118 TEEYYIIEVNARLSRSSALASK 139


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 425 LHIKWTSYV*SFSYDS---RYFLSF 360
           LHI WTSY   F  D+   +YF++F
Sbjct: 101 LHILWTSYKKVFMKDNILRQYFITF 125


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -1

Query: 425 LHIKWTSYV*SFSYDS---RYFLSF 360
           LHI WTSY   F  D+   +YF++F
Sbjct: 84  LHILWTSYKKVFMKDNILRQYFITF 108


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/37 (21%), Positives = 22/37 (59%)
 Frame = -2

Query: 607 NFYSNLSTSRHHISRFNW*SQNNFSGHCHKIMINVLD 497
           N+  N + + ++ + +N    NN++ +C K+  N+++
Sbjct: 328 NYKYNYNNNNYNNNNYN----NNYNNNCKKLYYNIIN 360


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 594  TFPHPAITLAGSTGSP 547
            TFPHP    +G+ G P
Sbjct: 1747 TFPHPGNGHSGTMGPP 1762


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,255
Number of Sequences: 438
Number of extensions: 4643
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)