Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021297
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    31   0.16 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    29   0.63 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    26   5.9  
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc...    25   7.8  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    25   7.8  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 17/67 (25%), Positives = 36/67 (53%)
 Frame = +1

Query: 331 KHIVMSERETQLVPVLKTRMKRTGPHPNQYLWPLVTAATFLENQSTSGSEVPQSQEHHHP 510
           K++V++      VP+ K  ++R G H  ++L+ + T  +   ++ TS     +++  H P
Sbjct: 141 KYLVVTNPVNSTVPIFKKALERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIP 200

Query: 511 VCDIGGY 531
           V  +GG+
Sbjct: 201 V--VGGH 205


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 195 RLCYQLHDSRWFCIK*HEVFILRLQCSAL--YGVRILFAAKTHCHC 326
           RLC+Q+  + WF    +E FI R Q   L   G+R+ F+AK   HC
Sbjct: 33  RLCFQIEQAHWF----YEDFI-RAQNDQLPSLGLRV-FSAKLFAHC 72


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 357 DPTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPI----HFRVRGSTITGASPPS 512
           DP +S +     ++ +SSQP   ++S+S++ S  P      +    S ++ +S PS
Sbjct: 168 DPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPS 223


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +1

Query: 427 PLVTAATFLENQSTSGSEVPQSQEHHHPVCDIGGYYEGLAHGM 555
           P   + TF +N +T+ + + +  E  +P+C+  G Y  + HG+
Sbjct: 164 PHEPSVTFCQNCATTNTPLWRRDESGNPICNACGLYYKI-HGV 205


>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
           Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 596

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 236 KMTRSFYIAPSVLGLIRSKDIVC 304
           + T+S ++  + LGL +S+D+VC
Sbjct: 355 RRTQSMFLNSTRLGLFKSQDLVC 377


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 617 NGSNLKSLSTSQSRGLKPMFC 555
           + SNL + +TS+S   KP +C
Sbjct: 55  SSSNLSNFTTSESESSKPAYC 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,156,066
Number of Sequences: 5004
Number of extensions: 67402
Number of successful extensions: 199
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)