Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021297
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022           29   3.5  
11_06_0498 - 24344454-24344660,24344840-24344944,24345324-243454...    28   6.0  
08_02_1605 - 28166338-28166418,28166496-28166567,28166655-281667...    28   6.0  
04_03_0306 + 14136338-14136686,14137408-14137442,14137701-141377...    28   8.0  

>02_01_0574 + 4247469-4248196,4249501-4249691,4250565-4251022
          Length = 458

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/78 (28%), Positives = 32/78 (41%)
 Frame = +3

Query: 267 QCSALYGVRILFAAKTHCHCAKTYRHE*TRDPTSSGSKDQNEANRTSSQPVPMASSNSSY 446
           QCS  + +     AK  C    T  +   R PT+ G   ++      S+    AS  SSY
Sbjct: 240 QCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPTAGGQSSKDSPPPPPSKKGTDASIASSY 299

Query: 447 FSGEPIHFRVRGSTITGA 500
            S +  H +   ST T +
Sbjct: 300 TSCD--HHKAAASTTTAS 315


>11_06_0498 -
           24344454-24344660,24344840-24344944,24345324-24345407,
           24345523-24345615,24345795-24345920,24347157-24347315,
           24347398-24347475,24348316-24348375,24349433-24349555,
           24349961-24350041
          Length = 371

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 678 STLCAMVSSTKFLVTVVWRIKWFQLKIVINQPISWAK 568
           STL  M  S+KFL  + W + WF   + + +  SWAK
Sbjct: 75  STLAVMKKSSKFLPVIGWSM-WFAEYLFLER--SWAK 108


>08_02_1605 -
           28166338-28166418,28166496-28166567,28166655-28166771,
           28166846-28166956,28167077-28167252,28167340-28167421,
           28167662-28167808,28167887-28168252,28168558-28168741,
           28169104-28169213,28169452-28169508,28169589-28169600,
           28169899-28169961,28170010-28170057,28170166-28170246,
           28170326-28170389,28170661-28170686,28170782-28170868,
           28170942-28170969,28171194-28171255,28171364-28171576,
           28171667-28171774,28171948-28172022,28172136-28172249,
           28172597-28172644,28172688-28172767,28172974-28173049,
           28173287-28173427,28173685-28173762,28175100-28175204,
           28177061-28177147,28177287-28178579
          Length = 1463

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 672 LCAMVSSTKFLVTVVWRIKWFQLKIVINQPI 580
           LC +   T  L+ VVWR  W    ++ N P+
Sbjct: 438 LCGVALQTLILLFVVWRTDWKAESLIPNPPL 468


>04_03_0306 +
           14136338-14136686,14137408-14137442,14137701-14137778,
           14138046-14138124,14138731-14138823,14139472-14139556,
           14140270-14140345,14140669-14140794,14141039-14141137,
           14141238-14141339,14141561-14141671,14141809-14141904,
           14142488-14142539,14142624-14142735,14142879-14142943,
           14144124-14144521,14145236-14145330,14145989-14146015,
           14146081-14146156,14146368-14146421,14146741-14146863,
           14146955-14147023
          Length = 799

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = +3

Query: 360 PTSSGSKDQNEANRTSSQPVPM-ASSNSSY 446
           P S+G + + E N+T+SQPV + A+SN  Y
Sbjct: 634 PPSNG-RTERERNKTASQPVQLNATSNGDY 662


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,912,806
Number of Sequences: 37544
Number of extensions: 415079
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)