Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021297
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 29 2.7
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 28 6.2
SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5) 28 6.2
SB_13234| Best HMM Match : PSI (HMM E-Value=4.4) 28 6.2
SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2) 28 6.2
SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09) 28 6.2
SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036) 28 6.2
SB_38379| Best HMM Match : GspM (HMM E-Value=1.4) 28 8.1
>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1453
Score = 32.3 bits (70), Expect = 0.38
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 2/101 (1%)
Frame = +1
Query: 325 VQKHIVMSERETQLVPVLKTRMKRTGPHPNQYLW--PLVTAATFLENQSTSGSEVPQSQE 498
+ H ++ +L V + G PN++L PL+T + +G + QE
Sbjct: 564 INHHGTFYPKKKKLRVVFNCSQEYMGESPNKHLLQGPLLT-------NNLAGVLMRFRQE 616
Query: 499 HHHPVCDIGGYYEGLAHGMQNMGFSPRDWLVDNDFKLEPFD 621
CDI G + + +N W DNDF LEP D
Sbjct: 617 PVAFTCDIEGMFHQVRVDPENRDLLRFIWWKDNDFSLEPID 657
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 436 TAATFLENQSTSGSEVPQSQ-EHHHPVCDIGGYYEGLAHGMQNMGFSPRDWLV 591
TAA+ ST + P+S E G YEGL + NMGF RD +V
Sbjct: 195 TAASATTTASTPAASTPRSYIEEAESALATGTEYEGLVTEIMNMGFE-RDQVV 246
>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2708
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 523 GGYYEGLAHGMQNMGFSPRD-WLVDNDFKLEPFDSPDXSYQKFGGRNHGTERTLD 684
GG+Y ++N + +D W + ND +++PFD + + FGG T +T D
Sbjct: 1390 GGHYYSF---IRNRSYPQQDKWFLFNDAEVKPFDPSQIAGECFGGEM--TTKTYD 1439
>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 28 DDMFFFNDNYLSQYTSKSKSLRATVPGA 55
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 843 DDMFFFNDNYLSQYTSKSKSLRATVPGA 870
>SB_48665| Best HMM Match : CM1 (HMM E-Value=2.5)
Length = 632
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 370 DDMFFFNDNYLSQYTSKSKSLRATVPGA 397
>SB_13234| Best HMM Match : PSI (HMM E-Value=4.4)
Length = 240
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 56 DDMFFFNDNYLSQYTSKSKSLRATVPGA 83
>SB_58411| Best HMM Match : SKIP_SNW (HMM E-Value=3.2)
Length = 353
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 113 DDMFFFNDNYLSQYTSKSKSLRATVPGA 140
>SB_44935| Best HMM Match : SAP (HMM E-Value=1.7e-09)
Length = 1487
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 817 DDMFFFNDNYLSQYTSKSKSLRATVPGA 844
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 1194 DDMFFFNDNYLSQYTSKSKSLRATVPGA 1221
>SB_12214| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 352
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = -3
Query: 342 DDMFLHNDNEFSQQTISLLRIRPSTEGA 259
DDMF NDN SQ T +R + GA
Sbjct: 35 DDMFFFNDNYLSQYTSKSKSLRATVPGA 62
>SB_38379| Best HMM Match : GspM (HMM E-Value=1.4)
Length = 697
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 467 LQGQRFHNHRSITTQFVTLEDIMKGWLMECKTWALA 574
L Q HNH +T+ED+ K W + + W L+
Sbjct: 44 LSDQNRHNHFHGNDSLITVEDLWKSW-VSSEDWQLS 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,994,065
Number of Sequences: 59808
Number of extensions: 482274
Number of successful extensions: 1059
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -