Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021297
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical...    35   0.047
AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical...    35   0.047
AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr...    29   4.1  
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z30974-2|CAD82916.1|  478|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z30974-1|CAA83225.3|  566|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AY090485-1|AAM11894.1|  566|Caenorhabditis elegans high-affinity...    27   9.5  

>AC087079-18|AAK27867.2|  830|Caenorhabditis elegans Hypothetical
           protein Y37E3.17a protein.
          Length = 830

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 526 GYYEGLAHGMQNMGFSPRDWLVDNDFKLEPFDSPDXSYQKFGGRNHGTERT 678
           G+ +G++ G   +G    DW+VD +   E FD+    Y+++G R   TER+
Sbjct: 374 GFLDGVSSG-GGIGKYLADWIVDGEPPAELFDTDASRYERWGDRKFFTERS 423


>AC087079-17|AAT81177.1|  837|Caenorhabditis elegans Hypothetical
           protein Y37E3.17b protein.
          Length = 837

 Score = 35.1 bits (77), Expect = 0.047
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 526 GYYEGLAHGMQNMGFSPRDWLVDNDFKLEPFDSPDXSYQKFGGRNHGTERT 678
           G+ +G++ G   +G    DW+VD +   E FD+    Y+++G R   TER+
Sbjct: 381 GFLDGVSSG-GGIGKYLADWIVDGEPPAELFDTDASRYERWGDRKFFTERS 430


>AF047658-6|AAY86253.1|  295|Caenorhabditis elegans Hypothetical
           protein K03H6.6 protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 366 SSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITGASPPS 512
           S+ ++   +      +P+PM S+ + Y    P+ F  RG+ + G  P S
Sbjct: 140 STSAEASTQVQFVEQEPIPMYSTTTQYDQEPPVTFCERGTMMHGQEPLS 188


>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
            T01D3.7 protein.
          Length = 2882

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +3

Query: 351  TRDPTSSGSKDQNEANRTSSQPVPMASSNSSYFSGEPIHFRVRGSTITG 497
            T  PT+ GS  +     TS++P+  AS ++S  +   I   +R ST+ G
Sbjct: 2775 TSAPTTIGSSSEGPTTATSTEPIYTASPDTSPETEATIGPPIRISTVGG 2823


>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
           protein ZK430.5 protein.
          Length = 1276

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 196 LNINLLMRNKFMGRKLPAILCFFVDY*G*ICVYLALITD 80
           +  NL +R  F    +PA LCFF  Y G +C  +A + D
Sbjct: 135 MKCNLEVRRFFAA--IPAKLCFFYFYTGELCTAVACLID 171


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 351 TRDPTSSGSKDQNEANRTSSQPVPMASSN 437
           T  PTS+ +K    ++ T   P PMA+S+
Sbjct: 681 TNKPTSTSTKQTTSSSSTEHSPSPMATSS 709


>Z30974-2|CAD82916.1|  478|Caenorhabditis elegans Hypothetical
           protein K08E5.2b protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 LLRKLIVIVQKHIVMSERETQL-VPVLKTRMKRTGPHPNQYLWPLVTAATF 450
           LL  LI +V  +I  +     + VP++ T  +R G HP   + P   A++F
Sbjct: 358 LLTMLIAMVITNICSNTVTASIFVPIVATLAQRAGHHPFTLMLPTTLASSF 408


>Z30974-1|CAA83225.3|  566|Caenorhabditis elegans Hypothetical
           protein K08E5.2a protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 LLRKLIVIVQKHIVMSERETQL-VPVLKTRMKRTGPHPNQYLWPLVTAATF 450
           LL  LI +V  +I  +     + VP++ T  +R G HP   + P   A++F
Sbjct: 446 LLTMLIAMVITNICSNTVTASIFVPIVATLAQRAGHHPFTLMLPTTLASSF 496


>AY090485-1|AAM11894.1|  566|Caenorhabditis elegans high-affinity
           plasma membrane transporterINDY2 protein.
          Length = 566

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 LLRKLIVIVQKHIVMSERETQL-VPVLKTRMKRTGPHPNQYLWPLVTAATF 450
           LL  LI +V  +I  +     + VP++ T  +R G HP   + P   A++F
Sbjct: 446 LLTMLIAMVITNICSNTVTASIFVPIVATLAQRAGHHPFTLMLPTTLASSF 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,295,024
Number of Sequences: 27780
Number of extensions: 372952
Number of successful extensions: 993
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)